tanghaibao/goatools

Python library to handle Gene Ontology (GO) terms

Language: Python - Size: 57.5 MB - Last synced: 12 days ago - Pushed: 12 days ago - Stars: 727 - Forks: 209

deeptools/pyBigWig

A python extension for quick access to bigWig and bigBed files

Language: C - Size: 799 KB - Last synced: 3 days ago - Pushed: about 1 year ago - Stars: 202 - Forks: 47

sykhro/cancol-analysis 📦

Language: Jupyter Notebook - Size: 41.3 MB - Last synced: 16 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

sapporo-wes/sapporo-service

A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification.

Language: HTML - Size: 17.1 MB - Last synced: 21 days ago - Pushed: 22 days ago - Stars: 17 - Forks: 14

zakandrewking/escher

Build, share, and embed visualizations of metabolic pathways.

Language: JavaScript - Size: 28.5 MB - Last synced: 18 days ago - Pushed: 7 months ago - Stars: 204 - Forks: 79

bacpop/CELEBRIMBOR Fork of LeahRoberts/MAG_pangenome_pipeline

Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs

Language: Python - Size: 48 MB - Last synced: 29 days ago - Pushed: about 1 month ago - Stars: 8 - Forks: 0

seqan/seqan

SeqAn's official repository.

Language: C++ - Size: 150 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 452 - Forks: 170

mbhall88/ontime

Extract subsets of ONT (Nanopore) reads based on time

Language: Rust - Size: 146 KB - Last synced: 4 days ago - Pushed: 3 months ago - Stars: 16 - Forks: 1

Mohamed-Elmanzalawi/PCR-primer-script

Streamlining dataset analysis and primer design for efficient genetic studies. Our Project is driven by robust algorithms, aims to achieve quick and accurate results. Leveraging Muscle alignment and Primer-BLAST, the project simplifies the process to enhance the precision of genetic analysis.

Language: Python - Size: 9.55 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 2 - Forks: 0

kyu999/ProtParamJS

A tool to analyze proteins

Language: JavaScript - Size: 243 KB - Last synced: 18 days ago - Pushed: over 3 years ago - Stars: 4 - Forks: 2

YaoXinZhi/PheSeq

PheSeq, A Bayesian Deep Learning Model to Enhance and Interpret the Gene Disease Association Studies

Language: Python - Size: 102 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 2

AlkaffAhamed/Modified-K-Means-on-PDB-File

An implementation of modified K-Means clustering on Biological Data (Proteins).

Language: R - Size: 70.3 KB - Last synced: 6 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

xihaoli/MACIE

Multi-dimensional Annotation Class Integrative Estimation

Language: Python - Size: 42 KB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 8 - Forks: 1

waterml/blast2hgt

Determine horizontal transfers based on sequence similarity

Language: Perl - Size: 835 KB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 1

nahmedraja/GASAL2

Language: C++ - Size: 8.82 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 36 - Forks: 11

lasanthagithub/Acetylcholineserase_and_organophosphate_pesticide_interactions_with_SAS_Macros_SQL_Graph

Bioinformatics: Heatmap for the close contacts (or interactions) between the enzyme acetylcholineesterase and selected organophosphate pesticides

Language: HTML - Size: 447 KB - Last synced: 7 months ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

Funny-Silkie/stran

Translation tool: process DNA or RNA to protein by your customized genetic code table

Language: C# - Size: 308 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

edikedik/lXtractor

Feature extraction library for sequences and structures

Language: Python - Size: 4.24 MB - Last synced: 26 days ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

ban-m/jtk

JTK -- a regional diploid genome assembler

Language: Rust - Size: 5.54 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 18 - Forks: 1

sysu-software-2022/LoupeRunner

A modularized LoupeRunner with step by step processing pipeline

Language: Python - Size: 74.7 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 2 - Forks: 0

flowhub-team/WholeGenomeSequencing

Whole Genome Sequencing analysis, WGS analysis

Size: 889 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 78 - Forks: 10

ekaminuma/BARCODE_STAT

DNA BARCODE Statistics : Number of GBIF BOLD entries 2014-11-27

Language: Matlab - Size: 1.76 MB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 1 - Forks: 0

ddbj/SAPPORO_test_workflow 📦

Workflows written in common workflow language (CWL) for testing SAPPORO.

Language: Common Workflow Language - Size: 13.7 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

anand84471/PythonForBioinformatics

This repository will be helpful to start using python for your Bioinformatics projects.

Language: Python - Size: 723 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 3 - Forks: 3

NIcolasp14/NIcolasp14

[About me]

Size: 3.79 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

ShixiangWang/geek-r-tutorial

极客R：数据分析之道

Language: TeX - Size: 1.93 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 20 - Forks: 5

ihmpdcc/osdf-schemas

The OSDF JSON-Schema files for the HMP project

Language: Shell - Size: 146 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 12 - Forks: 3

giffordlabcvr/Hepadnaviridae-GLUE

A GLUE project for hepadnaviruses

Language: HTML - Size: 36.7 MB - Last synced: about 10 hours ago - Pushed: about 11 hours ago - Stars: 0 - Forks: 0

chamkank/Python-DNA-Tool

Scripts for DNA translation, RNA transcription, GC content calculations, percent composition & ATCG base count calculations in Python

Language: Python - Size: 180 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 10 - Forks: 0

chungongyu/siga

SIGA is a de novo genome assembler compatible with the SGA file format

Language: C++ - Size: 669 KB - Last synced: 21 days ago - Pushed: 22 days ago - Stars: 3 - Forks: 0

arupgsh/NGS_PreQC

Language: Python - Size: 2.93 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

masikol/preprocess16S

Preprocessing for 16S rDNA Illumina reads

Language: Python - Size: 358 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

hkrkizum/BashScript

Scripts for RNA-seq, Windows subsystem on Linux

Language: Shell - Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

chris-rands/CrUtils

Various (mostly bioinformatic) utility scripts

Language: Python - Size: 14.6 KB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0

ekaminuma/GTASSIST

GTASSIST: Objective evaluation measures of genetic marker selection in SNP genotyping (2008-02-05)

Language: Matlab - Size: 97.8 MB - Last synced: 7 months ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

jonathanlyonmoore/Microsoft-Biology-Foundation

Original .NET Bio I worked on at Outercurve with Microsoft Research in College. Thanks Rick Benge

Language: C# - Size: 315 MB - Last synced: 6 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

gibarsin/bioinformatics-tp1

Trabajo Práctico para Introducción a Bioinformática en ITBA

Language: Java - Size: 11.4 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

YannDubs/FourRussiansRNA

Faster algorithms for RNA-folding using the Four-Russians method

Language: C++ - Size: 1.74 MB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 2 - Forks: 1

gkoulouras/easyFRAP-web

A web tool for the analysis of Fluorescence Recovery After Photobleaching (FRAP) data.

Language: JavaScript - Size: 3.42 MB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 2 - Forks: 0

jdreyf/fat-exosome-microrna

Data/code/output for "Adipose-derived circulating miRNAs regulate gene expression in other tissues" by Thomou, Mori, Dreyfuss, et al. (2017)

Language: R - Size: 854 KB - Last synced: 7 months ago - Pushed: about 7 years ago - Stars: 1 - Forks: 1

suecharo/CPFF

Language: Python - Size: 11 MB - Last synced: 11 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0