GitHub topics: enrichment

Repositories

UtrechtUniversity/ricgraph

Ricgraph - Research in context graph

Language: Python - Size: 150 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 27 - Forks: 4

peopledatalabs/peopledatalabs-python

A Python client for the People Data Labs API

Language: Python - Size: 646 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 32 - Forks: 4

saezlab/decoupler-py

Python package to perform enrichment analysis from omics data.

Language: Python - Size: 83 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 192 - Forks: 28

intelowlproject/IntelOwl

IntelOwl: manage your Threat Intelligence at scale

Language: Python - Size: 146 MB - Last synced at: 6 days ago - Pushed at: 9 days ago - Stars: 4,102 - Forks: 486

yeti-platform/yeti

Your Everyday Threat Intelligence

Language: Python - Size: 34.7 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 1,843 - Forks: 299

gchq/stroom

Stroom is a highly scalable data storage, processing and analysis platform.

Language: Java - Size: 186 MB - Last synced at: 7 days ago - Pushed at: 8 days ago - Stars: 442 - Forks: 58

elastic/llm-detection-proxy

A proxy tool for detecting and logging LLM queries to Elasticsearch.

Language: Python - Size: 129 KB - Last synced at: 8 days ago - Pushed at: 9 months ago - Stars: 8 - Forks: 1

Let-s-build-something/enrichment-app

Multiplatform instant messaging application with shared UI, built on open source Matrix Protocol.

Language: Kotlin - Size: 78.3 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 3 - Forks: 0

egeulgen/pathfindR

pathfindR: Enrichment Analysis Utilizing Active Subnetworks

Language: R - Size: 354 MB - Last synced at: 2 days ago - Pushed at: 2 months ago - Stars: 188 - Forks: 27

TheHive-Project/Cortex-Analyzers

Cortex Analyzers Repository

Language: Python - Size: 198 MB - Last synced at: 13 days ago - Pushed at: 15 days ago - Stars: 452 - Forks: 384

MISP/misp-modules

Modules for expansion services, enrichment, import and export in MISP and other tools.

Language: Python - Size: 14.2 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 353 - Forks: 234

superstreamlabs/memphis

Memphis.dev is a highly scalable and effortless data streaming platform

Language: Go - Size: 468 MB - Last synced at: 13 days ago - Pushed at: 11 months ago - Stars: 3,294 - Forks: 223

guokai8/richR

Function Enrichment analysis and Network construction

Language: R - Size: 3.21 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 11 - Forks: 5

metabolomicsworkbench/MetENP

Metabolite enrichment analysis and their associated enriched pathways

Language: Jupyter Notebook - Size: 41 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 5 - Forks: 4

opensemanticsearch/open-semantic-etl

Python based Open Source ETL tools for file crawling, document processing (text extraction, OCR), content analysis (Entity Extraction & Named Entity Recognition) & data enrichment (annotation) pipelines & ingestor to Solr or Elastic search index & linked data graph database

Language: Python - Size: 615 KB - Last synced at: 19 days ago - Pushed at: over 2 years ago - Stars: 267 - Forks: 72

sen-laboratories/sensei

SEN module for Structure Extraction, Navigation, Semantic Enrichment and Identification

Language: C++ - Size: 4.86 MB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 0 - Forks: 0

barupal/ChemRICH

Chemical Similarity Enrichment analysis of metabolomics datasets

Language: R - Size: 158 MB - Last synced at: 3 days ago - Pushed at: 9 months ago - Stars: 28 - Forks: 13

peopledatalabs/peopledatalabs-js

A universal JS client with TypeScript support for the People Data Labs API

Language: TypeScript - Size: 999 KB - Last synced at: 20 days ago - Pushed at: about 1 month ago - Stars: 24 - Forks: 9

sib-swiss/enrichment-analysis-training

Course material for Enrichment analysis course by SIB

Size: 162 MB - Last synced at: 24 days ago - Pushed at: about 1 month ago - Stars: 10 - Forks: 9

GIScience/osm-transform-cpp 📦

Custom data filtering and enrichment for OpenStreetMap PBF files for a better openrouteservice graph building

Language: C++ - Size: 3.4 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 0

moosa-r/rbioapi

rbioapi: User-Friendly R Interface to Biologic Web Services' API

Language: R - Size: 40.5 MB - Last synced at: 25 days ago - Pushed at: 3 months ago - Stars: 21 - Forks: 1

peopledatalabs/peopledatalabs-go

A Go client for the People Data Labs API

Language: Go - Size: 83 KB - Last synced at: 11 days ago - Pushed at: 2 months ago - Stars: 8 - Forks: 0

slowkow/homerkit

Read HOMER motif analysis output in R.

Language: R - Size: 16.6 KB - Last synced at: 12 days ago - Pushed at: about 7 years ago - Stars: 16 - Forks: 3

krassowski/gsea-api

Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)

Language: Python - Size: 162 KB - Last synced at: 6 days ago - Pushed at: about 2 years ago - Stars: 14 - Forks: 2

slowkow/snpsea

:bar_chart: Identify cell types and pathways affected by genetic risk loci.

Language: C++ - Size: 20.5 MB - Last synced at: 12 days ago - Pushed at: about 1 year ago - Stars: 37 - Forks: 9

peopledatalabs/peopledatalabs-rust

A Rust client for the People Data Labs API

Language: Rust - Size: 90.8 KB - Last synced at: 11 days ago - Pushed at: 2 months ago - Stars: 2 - Forks: 2

peopledatalabs/peopledatalabs-ruby

A Ruby client for the People Data Labs API

Language: Ruby - Size: 46.9 KB - Last synced at: 11 days ago - Pushed at: 2 months ago - Stars: 6 - Forks: 0

Nuclear-Verification-and-Disarmament/miso_enrichment

A multi isotope enrichment module for the nuclear fuel cycle simulator Cyclus

Language: C++ - Size: 788 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 2 - Forks: 3

DNS-OARC/dsc-datatool

Tool for converting, exporting, merging and transforming DSC data

Language: Python - Size: 302 KB - Last synced at: 19 days ago - Pushed at: 5 months ago - Stars: 16 - Forks: 10

GreallyLab/gaiaAssociation

gaiaAssociation is a tool to detect the cell specific enrichment of loci in regulatory regions through the sum of non-identical binomials

Language: Python - Size: 505 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 3 - Forks: 1

FrietzeLabUVM/ssvQC

R package for QC of enrichment based NGS assays. ChIP-seq, cut&run, ATAC-seq, etc.

Language: R - Size: 2.49 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 5 - Forks: 0

reactome/reactome2py

python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.

Language: Python - Size: 337 KB - Last synced at: 19 days ago - Pushed at: about 1 year ago - Stars: 28 - Forks: 9

ncrna/Yeskit

Yet another single-cell analysis toolkit

Language: HTML - Size: 4.55 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 7 - Forks: 0

osskit/fetch-enhancers

A suite of HoCs to enrich your Fetch calls

Language: TypeScript - Size: 366 KB - Last synced at: 6 days ago - Pushed at: 4 months ago - Stars: 1 - Forks: 4

BaderLab/EnrichmentMapApp

The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.

Language: Java - Size: 108 MB - Last synced at: 21 days ago - Pushed at: 7 months ago - Stars: 34 - Forks: 12

CyberSecAI/CWE-Expert

A CWE-Expert can be built for free in a browser in less than 5 minutes using the CWE Corpus files provided here

Language: Jupyter Notebook - Size: 19.1 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

slowkow/CENTIPEDE.tutorial

:bug: How to use CENTIPEDE to determine if a transcription factor is bound.

Language: R - Size: 3.76 MB - Last synced at: 12 days ago - Pushed at: about 7 years ago - Stars: 26 - Forks: 13

digirati-co-uk/madoc-platform

A platform for the display, enrichment, and curation of IIIF-based digital objects

Language: TypeScript - Size: 15.1 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 52 - Forks: 14

saramasarone/enrich_omics

A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)

Language: Python - Size: 3.19 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 19 - Forks: 0

enrichment-api/Enrichment-api-node

Company and Email Enrichment API NodeJs

Language: JavaScript - Size: 30.3 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

enrichment-api/Enrichment-api-go

Company and Email Enrichment API go

Language: Go - Size: 29.3 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

gallis-local/elasticsearch-private-geoip-enrich

Elasticsearch Private GeoIP Enrichment Generator

Language: Python - Size: 36.1 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

corelight/terraform-gcp-enrichment

Terraform for Corelight's GCP Cloud Enrichment.

Language: HCL - Size: 307 KB - Last synced at: 4 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

corelight/terraform-azure-enrichment

Terraform for Corelight's Azure Cloud Enrichment.

Language: HCL - Size: 94.7 KB - Last synced at: 4 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

corelight/terraform-aws-enrichment

Terraform for Corelight's AWS Cloud Enrichment.

Language: HCL - Size: 78.1 KB - Last synced at: 4 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0

AD4GD/pilot-2-gbif-iucn

Tool enriching the list of (subspecies) with data from IUCN, GBIF and ancillary sources

Language: Python - Size: 17.8 MB - Last synced at: 26 days ago - Pushed at: 7 months ago - Stars: 1 - Forks: 1

DeplanckeLab/ASAP

ASAP : Automated Single-cell Analysis Pipeline

Language: Java - Size: 170 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 23 - Forks: 10

fullcontact/fullcontact-python-client

Official python client library for the fullcontact Enrich and Resolve APIs

Language: Python - Size: 160 KB - Last synced at: 11 days ago - Pushed at: over 2 years ago - Stars: 8 - Forks: 8

taniawyss/enrichment-analysis

Size: 17.8 MB - Last synced at: 21 days ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

JEFworks/liger

Lightweight Iterative Gene set Enrichment in R

Language: R - Size: 8.25 MB - Last synced at: 30 days ago - Pushed at: 7 months ago - Stars: 57 - Forks: 9

yeti-platform/pyeti

Python bindings for Yeti's API

Language: Python - Size: 187 KB - Last synced at: 11 days ago - Pushed at: over 1 year ago - Stars: 18 - Forks: 12

Efler/microservice-data-bus

Data bus based on Apache Kafka and consisting of separate components [copied from own private repos]

Language: Java - Size: 78.7 MB - Last synced at: about 1 month ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

rosscm/fedup

Bioconductor package for pathway enrichment and depletion analysis via a Fisher's exact test on custom test sets and annotations

Language: R - Size: 10.8 MB - Last synced at: 4 days ago - Pushed at: almost 4 years ago - Stars: 7 - Forks: 0

tgolubch/castanet

Data processing scripts for analysis of targeted metagenomics sequencing data. Intended for use with multiplexed Illumina short-read data generated after enrichment.

Language: Python - Size: 27.3 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 1

lisiarend/PRONE

R Package for preprocessing, normalizing, and analyzing proteomics data

Language: R - Size: 40.4 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

ELTEbioinformatics/mulea Fork of koralgooll/MulEA

mulea - an R package for enrichment analysis using various ontologies and empirical FDR correction

Language: R - Size: 297 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 11 - Forks: 1

TohaRhymes/bioGWAS

Tool for GWAS simulations

Language: Jupyter Notebook - Size: 35.4 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

stewiethepro/Google-Sheets-Email-Sequence-Draft-Generator

Build a lead list and draft email sequences, all without leaving Google Sheets.

Language: JavaScript - Size: 47.9 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

billmurrin/graylog-plugin-slookup-function

Stream Lookup function for GrayLog2 Pipeline Processor

Language: Java - Size: 55.7 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 14 - Forks: 4

fr33m0nk/lusha-client 📦

Lusha API client for Typescript/Javascript

Language: TypeScript - Size: 44.9 KB - Last synced at: about 18 hours ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

TNTurnerLab/fitDNM

Code for running fitDNM genome-wide by using Snakemake

Language: Python - Size: 531 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 0

Esri/geoenrichment-samples

Code samples using Esri’s geoenrichment service

Language: HTML - Size: 1.09 MB - Last synced at: 8 months ago - Pushed at: over 3 years ago - Stars: 7 - Forks: 3

la-gruge/urssaf-phone-finder

Phone finder utilisant les données de l'URSSAF

Language: Python - Size: 546 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

opencitations/oc_graphenricher

A tool to enrich any OCDM compliant Knowledge Graph, finding new identifiers and deduplicating entities.

Language: Python - Size: 268 KB - Last synced at: 1 day ago - Pushed at: about 1 year ago - Stars: 10 - Forks: 3

reese3928/methylGSA

A Bioconductor package and shiny app for DNA methylation data length bias adjustment in gene set testing

Language: R - Size: 7.06 MB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 8 - Forks: 2

kerseviciute/aPEAR

Enrichment Networks for Pathway Enrichment Analysis

Language: R - Size: 4.99 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 14 - Forks: 4

IPHYS-Bioinformatics/LORA

LORA: Lipid Over-Representation Analysis

Language: Python - Size: 18.2 MB - Last synced at: 12 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

enormandeau/go_enrichment

Transcripts annotation and GO enrichment Fisher tests

Language: Python - Size: 52.7 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 24 - Forks: 16

pmerinodiaz/enrichment

Documentación de Enrichment. Componente de software que permite realizar cálculos numéricos.

Language: JavaScript - Size: 7.28 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

suhasvasaikar/GSEA_PHP

Gene set enrichment analysis with PHP

Language: PHP - Size: 13.9 MB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0

jessarnull/87181_RO2_SEAGRASS_2022

# PeerJ Special Issue on Seagrass for International Association for Biological Oceanography | September 2023 Seagrass nitrogen enrichment experiment, Laamu Maldives, January 2022. SANH project. Collaboration with University of Edinburgh and Maldives Resilient Reefs.

Language: R - Size: 528 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

stewiethepro/Google-Sheets-Crunchbase-Verification

Clean up a lead list by querying the Crunchbase API for your leads' domains, all without leaving Google Sheets.

Language: JavaScript - Size: 2.93 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

james0x01/Enrich_conn

Enrich the connections log with data from a CSV

Language: Zeek - Size: 4.88 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

james0x01/Extend_Conn_MSS_SACK

Extend the connections log with max segment size and selective ACK

Language: Zeek - Size: 2.93 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

tenapril/kuaci

Indonesian KTP Validator + Enrichment [Open Source]

Language: Jupyter Notebook - Size: 899 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 25 - Forks: 4

TheCodefatherPartII/iceberg-backend 📦

2018 ASEAN-Australia Codeathon Project

Language: JavaScript - Size: 250 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

ACDBio/EVB

A shiny app to perform pathway, drug, brain cell type and brain region (based on the Allen Brain Atlas data) enrichment and visualize the results.

Language: R - Size: 71.9 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

YichaoOU/pyGREAT

GREAT analysis, http://great.stanford.edu/public/html/, python wrapper

Language: Python - Size: 4.88 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

marvinquiet/LRcell

The goal of LRcell is to identify specific sub-cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment. To achieve this, LRcell utilizes sets of cell marker genes acquired from single-cell RNA-sequencing (scRNA-seq) as indicators for various cell types in the tissue of interest. Next, for each cell type, using its marker genes as indicators, we apply Logistic Regression on the complete set of genes with differential expression p-values to calculate a cell-type significance p-value. Finally, these p-values are compared to predict which one(s) are likely to be responsible for the differential gene expression pattern observed in the bulk RNA-seq experiments.

Language: R - Size: 91 MB - Last synced at: 4 days ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1

DavidBruchmann/wdb_news_snapin

Layout-container for the TYPO3 extension news, with the advantage that the content-elements can be assigned to define-able areas. So Wiki-pages, Knowlegbases or just feature-rich articles can be created. Think about diagrams, tables, individual article-layouts, footnotes and individual extensions bound to a single article instead of a whole page.

Language: PHP - Size: 986 KB - Last synced at: about 1 month ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0