GitHub topics: reactome-pathway
amarinderthind/RNA-seq-tutorial-for-gene-differential-expression-analysis
This RNAseq data analysis tutorial is created for educational purpose
Language: R - Size: 2.58 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 33 - Forks: 13
geneontology/reactome-go-cams
A set of GO-CAMs built automatically from Reactome pathways.
Size: 150 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0
reactome/fireworks-layout
Custom radial layout algorithm to visualise Reactome pathways in a space-filling graph
Language: Java - Size: 1.76 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 3
dvklopfenstein/ReactomePy
Explore biomolecular pathways in Reactome from the command-line or a Python script
Language: Python - Size: 17.1 MB - Last synced at: 5 months ago - Pushed at: 11 months ago - Stars: 23 - Forks: 4
linas/biome-distribution
Research into statistical distributions of genomes, proteomes and reactomes
Language: Scheme - Size: 14.2 MB - Last synced at: 6 months ago - Pushed at: over 3 years ago - Stars: 6 - Forks: 0
genescf/GeneSCF
Gene Set Clustering based on Functional annotation
Language: Perl - Size: 4.53 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 21 - Forks: 5
francescopatane96/RNA-seq_Pipeline
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...
Language: Jupyter Notebook - Size: 31.3 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 1
Greco-Lab/FunMappOne
FunMappOne: a tool to summarize and visually navigate functional categories in multiple experiments.
Language: R - Size: 2.71 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 3
CaseOLAP/covid-cvd
Understanding the Molecular Interface of Cardiovascular Disease and COVID-19: A Data Science Approach
Language: Jupyter Notebook - Size: 1.46 MB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
