GitHub topics: gene-set-enrichment-analysis
yassineS/ithraa
Itraa: A gene-set enrichment pipeline for selection and gene-based analyses.
Language: Python - Size: 2.07 MB - Last synced at: 8 days ago - Pushed at: 9 days ago - Stars: 0 - Forks: 0
gencorefacility/r-notebooks
Gene Set Enrichment Analysis and Over Representation Analysis analysis using R
Size: 1.33 MB - Last synced at: about 2 months ago - Pushed at: almost 6 years ago - Stars: 20 - Forks: 25
arashsm79/tasmanian-devil-gene-enrichment-analysis
The Tasmanian devil is endangered due to Devil Facial Tumour Disease (DFTD), a contagious cancer with no current treatment. Previous study has investigated the anticancer properties of Tasmanian devil cathelicidins. This report intends to reproduce the enrichment analysis results of the study and further analyze their data.
Language: TeX - Size: 84.6 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
meringlab/annotation_system_assessment
Snakemake pipeline to benchmark 11 functional pathway annotation systems
Language: Python - Size: 7.1 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
francescopatane96/RNA-seq_Pipeline
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...
Language: Jupyter Notebook - Size: 31.3 KB - Last synced at: 9 months ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 1
PiotrTymoszuk/collagen_pca
Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma
Language: R - Size: 144 MB - Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
MolecularPathologyLab/SubtypeExploreR
Web application that enables users to compare the expression of genes or enrichment of gene sets between different molecular subtypes of colorectal cancer
Language: HTML - Size: 950 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
PiotrTymoszuk/lymphokine_RCC
Role of CXCL9/10/11, CXCL13 and XCL1 in recruitment and suppression of cytotoxic T cells in renal cell carcinoma
Language: R - Size: 91 MB - Last synced at: 9 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
thimler/RNAseq
Assessing the effectiveness of endocrine therapy in breast cancer using RNAseq data
Language: R - Size: 12.9 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
thimler/SCRNAseq
Gene set enrichment analysis from scRNA seq data : in search of the original tissue
Language: R - Size: 7.18 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0