Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: limma

Repositories

qplevier/geneset_visualisation_pipeline

Language: Java - Size: 234 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 0

aobermayer4/CPTAC_LUAD_HaploAnalysis

Methods overview with scripts looking at mtDNA and haplogroup association with CPTAC LUAD study.

Language: R - Size: 4.42 MB - Last synced at: 13 days ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

epigen/dea_limma

A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.

Language: R - Size: 115 KB - Last synced at: 13 days ago - Pushed at: 16 days ago - Stars: 14 - Forks: 0

nf-core/differentialabundance

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

Language: Nextflow - Size: 7.81 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 46 - Forks: 27

ComputationalProteomics/NormalyzerDE

Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.

Language: R - Size: 5.88 MB - Last synced at: 24 days ago - Pushed at: 25 days ago - Stars: 18 - Forks: 5

mejian1/ExopherGeneExpressionProfiling

Bioinformatic analysis of gene expression microarray profiles and DGEs on R and R studio

Language: Jupyter Notebook - Size: 1020 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 0

yafeng/DEqMS

DEqMS is a tool for quantitative proteomic analysis

Language: R - Size: 17 MB - Last synced at: 3 months ago - Pushed at: about 4 years ago - Stars: 19 - Forks: 2

mucosal-immunology-lab/microbiome-analysis

A selection of analytical approaches, tools, and utilities for the processing of microbiome data derived from either 16S rRNA amplicon sequencing or shotgun metagenomics.

Language: R - Size: 1.6 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 2 - Forks: 0

kmyafi/Breast-Cancer-Differential-Gene-Expression-Analysis

Differential Gene Expression (DGE) Analysis in Curated Microarray Data of Breast Cancer Subtypes

Language: R - Size: 924 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

jmzeng1314/GEO

Language: R - Size: 376 MB - Last synced at: 8 months ago - Pushed at: over 1 year ago - Stars: 695 - Forks: 528

rgarcia-herrera/tuberculosis-diff

Tuberculosis@LOG and NPR, Macrophage gene expression time series.

Language: Python - Size: 1.02 MB - Last synced at: 8 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

eonurk/RNA-seq-differential-analyses-guideline

A quick recap of widely used differential analyses methods in R for RNA-seq experiments

Size: 320 KB - Last synced at: 8 months ago - Pushed at: over 4 years ago - Stars: 10 - Forks: 3

dev-ev/isobaric-prot-wf-r

Simple workflows for the isobaric-labeling proteomic data from Proteome Discoverer with ANOVA, t-testing, DEqMS/limma and annotation via fgsea

Language: R - Size: 959 KB - Last synced at: 8 months ago - Pushed at: about 2 years ago - Stars: 4 - Forks: 0

zjyoung9490/Gene-Expression-Analysis-of-Prostate-Tumor-Samples

Normalization, outlier detection, statistical analysis, and visualization of microarray data from 79 tumor samples to identify differentially expressed genes between recurrent and non-recurrent prostate cancer.

Size: 816 KB - Last synced at: 8 months ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 1

dlaperriere/GEO_microarrays

analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GEO)

Language: Python - Size: 79.1 KB - Last synced at: 8 months ago - Pushed at: almost 3 years ago - Stars: 7 - Forks: 4

BenaroyaResearch/SPresnell_GSE147507

GSE147507 SARS-Cov-2 Dataset from Mt. Sinai

Size: 15.1 MB - Last synced at: 10 months ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 2

peterlipan/DE_rpy2

Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2

Language: Jupyter Notebook - Size: 115 KB - Last synced at: 8 months ago - Pushed at: about 3 years ago - Stars: 10 - Forks: 0

SamThilmany/microarray-analysis_treatment-kinetics

This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.

Language: R - Size: 120 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

LieberInstitute/SPEAQeasyWorkshop2020

EuroBioc2020 SPEAQeasy workshop https://eurobioc2020.bioconductor.org by Nick Eagles and Josh Stolz. For more information about SPEAQeasy check http://research.libd.org/SPEAQeasy/. For an example on how to use this RNA-seq processing pipeline and analyze the output files check http://research.libd.org/SPEAQeasy-example/.

Language: R - Size: 13.9 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 0