Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: microarray-data-analysis

mofayezi/Bio-Project-Fall22

Microarray Data Analysis | Bioinformatics Course Project, Fall 2022

Language: Jupyter Notebook - Size: 23.3 MB - Last synced: about 9 hours ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

AcubeSAT/meta-analysis

Selection of genes to be cultured and studied on-board for the AcubeSAT nanosatellite project. Microarray data analysis in R. Meta-analysis in R. Literature review and more

Language: HTML - Size: 29.4 MB - Last synced: 11 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 1

CCBR/MAAPster

MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data

Language: R - Size: 50.5 MB - Last synced: 15 days ago - Pushed: 4 months ago - Stars: 9 - Forks: 6

gauravcodepro/plant-microarray-analysis

analysis of already normalized microarray expression profiles and perform batch analysis and plots the volcano plots and differential expression

Language: R - Size: 14.6 KB - Last synced: 24 days ago - Pushed: 29 days ago - Stars: 1 - Forks: 0

kleelab-bch/phet

PHet: Heterogeneity-Preserving Discriminative Feature Selection for Subtype Discovery

Language: Python - Size: 23 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 3 - Forks: 0

lbulic1003/TumorMicroArr_ML-2024

Tumor Identification Based on Machine Learning Analysis of Gene Expression (2024)

Language: Jupyter Notebook - Size: 778 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0

ebi-gene-expression-group/selectBCM

An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))

Language: R - Size: 129 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 1

Maximvan/AHTAOmicsAnalysisPCOS

Identification for Key Pathways and Genes in Polycystic Ovary Syndrome (PCOS) using a multi-omics approach, as part of the Applied High Throughput Analysis course at Ghent University

Size: 24.1 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 0

kpatel427/GEOquery-scripts

Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets

Language: R - Size: 35.2 KB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 3

harrisgm/GCSscore

Source code and description of GCSscore Package

Language: R - Size: 4.29 MB - Last synced: 8 months ago - Pushed: 10 months ago - Stars: 2 - Forks: 1

jckuan/NSCLC-Biomarker-Identification

In this project, we designed a pipeline to identify new biomarkers with microarray analysis. (AI & Intelligent Medicine, Spring 2022).

Language: Python - Size: 18.6 KB - Last synced: 8 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

kalyaniuniversity/mgx-datasets

A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.

Language: Python - Size: 32 MB - Last synced: 3 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 2

anedicksh/GenesetPCA-on-gene-expression-data-in-prion-infected-mice

Language: R - Size: 44.6 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

a-fsh-r/Sharif-An-Introduction-to-Bioinformatics-Project

This repository contains my solutions for project of An Intro to Bioinformatics course held at Sharif University of Technology (SUT) by Prof. Somayyeh Koohi and Prof. Ali Sharifi Zarchi in Fall 2021, 1400-1.

Language: R - Size: 6.99 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

ahmedmoustafa/gene-expression-datasets

Collection of gene expression datasets

Size: 22.9 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 4 - Forks: 0

fhaive/nextcast

Nextcast: a software suite to analyse and model toxicogenomics data

Language: R - Size: 62.3 MB - Last synced: 12 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

katerinakazantseva/sysbio_RNASeq

Size: 6.03 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

tarlaun/BioInf_Project

Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia

Language: Python - Size: 96.2 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 5 - Forks: 1

tiagochavo87/LCSH_analysis

Analysis of long continuous stretches of homozygosity of the human genome.

Language: Jupyter Notebook - Size: 42 KB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

SamThilmany/microarray-analysis_treatment-kinetics

This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.

Language: R - Size: 120 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

Piergiorge/Rarray

Analysis of microarray data from the GEO platform. The code comprises analysis of samples produced using the Affymetrix platform.

Language: R - Size: 3.81 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

xlxs4/meta-analysis

Selection of genes to be cultured and studied on-board for the AcubeSAT nanosatellite project. Microarray data analysis in R. Meta-analysis in R. Literature review and more

Language: HTML - Size: 29.4 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

oheil/NormalizeQuantiles.jl

NormalizeQuantiles.jl implements quantile normalization

Language: Julia - Size: 266 KB - Last synced: 20 days ago - Pushed: 4 months ago - Stars: 7 - Forks: 3

FernandoMarcon/AgingSystemsBiology

Data analysis and integration of several transcriptomics studies to uncover genes and co-expression networks associated with the ageing process.

Language: HTML - Size: 11.8 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

titansarus/Bioinformatics-Microarray-Analysis-AML

Acute Myeloid Leukemia Microarray Analysis

Language: Jupyter Notebook - Size: 11.9 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

Related Keywords
microarray-data-analysis 25 bioinformatics 10 microarray 8 microarray-data 7 r 6 gene-expression 4 ncbi-geo 3 bioinformatics-analysis 3 transcriptomics 3 meta-analysis 3 differential-expression 3 microarray-analysis 2 batch-correction 2 single-cell 2 datasets 2 python 2 network-analysis 2 umap 1 seurat 1 sequencing 1 ngs-analysis 1 lima 1 read-across 1 qsar 1 multi-view-clustering 1 modelling 1 functional-annotation 1 feature-selection 1 dose-response 1 cheminformatics 1 analytics 1 transciptomics 1 rna-seq-datasets 1 time-series-analysis 1 systems-biology 1 mutual-information 1 enrichment-analysis 1 dtw-algorithm 1 aging 1 statistics 1 quantile-normalization 1 quantile-normalisation 1 normalize-quantiles 1 normalise-quantiles 1 expression 1 limma 1 lcsh 1 homozygosity 1 genome-analysis 1 cromosome 1 geoparse 1 genetic-expression-omnibus 1 aml 1 acute-myeloid-leukemia 1 polycystic-ovary-syndrome 1 pcos 1 omics 1 multi-omics 1 methylation-analysis 1 hpc 1 high-throughput-data-analysis 1 ghent-university 1 bulk-rna-seq 1 tumor-classification 1 machine-learning 1 cancer-genomics 1 subtype-finding 1 scrna-seq-analysis 1 patient-subtyping 1 cell-types 1 microarray-experiments 1 quality-control 1 pathway-analysis 1 rna-seq 1 sharif-university 1 bioinformatics-algorithms 1 principal-component-analysis 1 pca 1 arrayexpress 1 affymetrix 1 preprocessing 1 preprocess-dataset 1 ncbi-database 1 ncbi 1 geneexpression 1 datascience 1 stringdb 1 healthcare 1 rma 1 neuroblastoma 1 geoquery 1 rna-seq-analysis 1