eliopato/pylluminator

Python package for processing and analyzing Illumina DNA methylation data

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kleelab-bch/phet

PHet: Heterogeneity-Preserving Discriminative Feature Selection for Subtype Discovery

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ShakiraAgata/Personal-Project-Investigating-backward-compatibility-of-an-outdated-Affymetrix-pipeline

This repository focused on the usage of a Microarray pipeline called ArrayAnalysis. It is intended to be viewed from the HTML webpage on a computer.

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lbulic1003/TumorMicroArr_ML

Tumor Identification Based on Machine Learning Analysis of Microarray Data

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shussin245/FDR-Hedenfalk-Microarray

Reproducing key findings from Storey and Tibshirani (2003) using preprocessed microarray data to analyze differentially expressed genes (DEGs). Leveraging R and statistical packages to explore the impact of parametric, permutation-based, and rank-based methods on False Discovery Rates.

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Preciousejiba/Identification-of-Biomarkers-for-Early-Stage-Hepatocellular-Carcinoma

"Identification of Biomarkers for Early-Stage Hepatocellular Carcinoma (HCC)" aims to address the critical global challenge of late-stage cancer diagnosis, which significantly lowers patient survival rates. It explores microarray gene expression datasets from GEO to identify potential early-stage biomarkers for improved patient outcomes.

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iamandreatonina/Network_based_Data-Analysis-

Project for the course of Network Based Data Analysis :computer:

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Mahsa-Ehsanifard/GEO_microarray

GEO microarray data analysis

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mofayezi/Bio-Project-Fall22

Microarray Data Analysis | Bioinformatics Course Project, Fall 2022

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AcubeSAT/meta-analysis

Selection of genes to be cultured and studied on-board for the AcubeSAT nanosatellite project. Microarray data analysis in R. Meta-analysis in R. Literature review and more

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CCBR/MAAPster

MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data

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ebi-gene-expression-group/selectBCM

An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))

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Maximvan/AHTAOmicsAnalysisPCOS

Identification for Key Pathways and Genes in Polycystic Ovary Syndrome (PCOS) using a multi-omics approach, as part of the Applied High Throughput Analysis course at Ghent University

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kpatel427/GEOquery-scripts

Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets

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harrisgm/GCSscore

Source code and description of GCSscore Package

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jckuan/NSCLC-Biomarker-Identification

In this project, we designed a pipeline to identify new biomarkers with microarray analysis. (AI & Intelligent Medicine, Spring 2022).

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kalyaniuniversity/mgx-datasets

A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.

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anedicksh/GenesetPCA-on-gene-expression-data-in-prion-infected-mice

Language: R - Size: 44.6 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

a-fsh-r/Sharif-An-Introduction-to-Bioinformatics-Project

This repository contains my solutions for project of An Intro to Bioinformatics course held at Sharif University of Technology (SUT) by Prof. Somayyeh Koohi and Prof. Ali Sharifi Zarchi in Fall 2021, 1400-1.

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ahmedmoustafa/gene-expression-datasets

Collection of gene expression datasets

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fhaive/nextcast

Nextcast: a software suite to analyse and model toxicogenomics data

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katerinakazantseva/sysbio_RNASeq

Size: 6.03 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

tarlaun/BioInf_Project

Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia

Language: Python - Size: 96.2 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 5 - Forks: 1

tiagochavo87/LCSH_analysis

Analysis of long continuous stretches of homozygosity of the human genome.

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trypanosomatics/The-Chagas-Disease-Antigen-and-Epitope-Atlas

The Trypanosoma cruzi Antigen and Epitope Atlas: deep characterization of individual antibody specificities in human Chagas Disease patients across the Americas

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SamThilmany/microarray-analysis_treatment-kinetics

This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.

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Piergiorge/Rarray

Analysis of microarray data from the GEO platform. The code comprises analysis of samples produced using the Affymetrix platform.

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xlxs4/meta-analysis

Selection of genes to be cultured and studied on-board for the AcubeSAT nanosatellite project. Microarray data analysis in R. Meta-analysis in R. Literature review and more

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oheil/NormalizeQuantiles.jl

NormalizeQuantiles.jl implements quantile normalization

Language: Julia - Size: 266 KB - Last synced at: 23 days ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 3

FernandoMarcon/AgingSystemsBiology

Data analysis and integration of several transcriptomics studies to uncover genes and co-expression networks associated with the ageing process.

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titansarus/Bioinformatics-Microarray-Analysis-AML

Acute Myeloid Leukemia Microarray Analysis

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samanwoy1989/septic_shock_metaanalysis

This repository contains the code for the project: Transcriptomic meta-analysis reveals up-regulation of gene expression functional in osteoclast differentiation in human septic shock

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