Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: microarray-data-analysis
mofayezi/Bio-Project-Fall22
Microarray Data Analysis | Bioinformatics Course Project, Fall 2022
Language: Jupyter Notebook - Size: 23.3 MB - Last synced: about 9 hours ago - Pushed: 8 months ago - Stars: 0 - Forks: 0
AcubeSAT/meta-analysis
Selection of genes to be cultured and studied on-board for the AcubeSAT nanosatellite project. Microarray data analysis in R. Meta-analysis in R. Literature review and more
Language: HTML - Size: 29.4 MB - Last synced: 11 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 1
CCBR/MAAPster
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data
Language: R - Size: 50.5 MB - Last synced: 15 days ago - Pushed: 4 months ago - Stars: 9 - Forks: 6
gauravcodepro/plant-microarray-analysis
analysis of already normalized microarray expression profiles and perform batch analysis and plots the volcano plots and differential expression
Language: R - Size: 14.6 KB - Last synced: 24 days ago - Pushed: 29 days ago - Stars: 1 - Forks: 0
kleelab-bch/phet
PHet: Heterogeneity-Preserving Discriminative Feature Selection for Subtype Discovery
Language: Python - Size: 23 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 3 - Forks: 0
lbulic1003/TumorMicroArr_ML-2024
Tumor Identification Based on Machine Learning Analysis of Gene Expression (2024)
Language: Jupyter Notebook - Size: 778 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0
ebi-gene-expression-group/selectBCM
An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))
Language: R - Size: 129 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 1
Maximvan/AHTAOmicsAnalysisPCOS
Identification for Key Pathways and Genes in Polycystic Ovary Syndrome (PCOS) using a multi-omics approach, as part of the Applied High Throughput Analysis course at Ghent University
Size: 24.1 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 0
kpatel427/GEOquery-scripts
Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets
Language: R - Size: 35.2 KB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 3
harrisgm/GCSscore
Source code and description of GCSscore Package
Language: R - Size: 4.29 MB - Last synced: 8 months ago - Pushed: 10 months ago - Stars: 2 - Forks: 1
jckuan/NSCLC-Biomarker-Identification
In this project, we designed a pipeline to identify new biomarkers with microarray analysis. (AI & Intelligent Medicine, Spring 2022).
Language: Python - Size: 18.6 KB - Last synced: 8 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0
kalyaniuniversity/mgx-datasets
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
Language: Python - Size: 32 MB - Last synced: 3 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 2
anedicksh/GenesetPCA-on-gene-expression-data-in-prion-infected-mice
Language: R - Size: 44.6 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0
a-fsh-r/Sharif-An-Introduction-to-Bioinformatics-Project
This repository contains my solutions for project of An Intro to Bioinformatics course held at Sharif University of Technology (SUT) by Prof. Somayyeh Koohi and Prof. Ali Sharifi Zarchi in Fall 2021, 1400-1.
Language: R - Size: 6.99 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0
ahmedmoustafa/gene-expression-datasets
Collection of gene expression datasets
Size: 22.9 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 4 - Forks: 0
fhaive/nextcast
Nextcast: a software suite to analyse and model toxicogenomics data
Language: R - Size: 62.3 MB - Last synced: 12 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0
katerinakazantseva/sysbio_RNASeq
Size: 6.03 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
tarlaun/BioInf_Project
Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia
Language: Python - Size: 96.2 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 5 - Forks: 1
tiagochavo87/LCSH_analysis
Analysis of long continuous stretches of homozygosity of the human genome.
Language: Jupyter Notebook - Size: 42 KB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0
SamThilmany/microarray-analysis_treatment-kinetics
This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.
Language: R - Size: 120 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0
Piergiorge/Rarray
Analysis of microarray data from the GEO platform. The code comprises analysis of samples produced using the Affymetrix platform.
Language: R - Size: 3.81 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
xlxs4/meta-analysis
Selection of genes to be cultured and studied on-board for the AcubeSAT nanosatellite project. Microarray data analysis in R. Meta-analysis in R. Literature review and more
Language: HTML - Size: 29.4 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0
oheil/NormalizeQuantiles.jl
NormalizeQuantiles.jl implements quantile normalization
Language: Julia - Size: 266 KB - Last synced: 20 days ago - Pushed: 4 months ago - Stars: 7 - Forks: 3
FernandoMarcon/AgingSystemsBiology
Data analysis and integration of several transcriptomics studies to uncover genes and co-expression networks associated with the ageing process.
Language: HTML - Size: 11.8 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
titansarus/Bioinformatics-Microarray-Analysis-AML
Acute Myeloid Leukemia Microarray Analysis
Language: Jupyter Notebook - Size: 11.9 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0