Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: batch-correction
theislab/scarches
Reference mapping for single-cell genomics
Language: Jupyter Notebook - Size: 793 MB - Last synced at: about 14 hours ago - Pushed at: about 22 hours ago - Stars: 315 - Forks: 49
MangiolaLaboratory/sccomp
Testing differences in cell type proportions from single-cell data.
Language: R - Size: 88.9 MB - Last synced at: 3 days ago - Pushed at: 5 days ago - Stars: 78 - Forks: 6
CCBR/MAAPster
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data
Language: R - Size: 50.5 MB - Last synced at: 26 days ago - Pushed at: 5 months ago - Stars: 9 - Forks: 6
kAI-swa/M2ASDA
Manipulate scRNA-seq data with GSASD
Language: Python - Size: 1.5 MB - Last synced at: 27 days ago - Pushed at: 28 days ago - Stars: 3 - Forks: 0
metamaden/methyPre 📦
Methylation array preprocessing.
Language: R - Size: 1.12 MB - Last synced at: 22 days ago - Pushed at: almost 6 years ago - Stars: 5 - Forks: 1
kharchenkolab/conos
R package for the joint analysis of multiple single-cell RNA-seq datasets
Language: R - Size: 269 MB - Last synced at: 22 days ago - Pushed at: 4 months ago - Stars: 188 - Forks: 38
genepattern/Seurat.IntegrateData
GenePattern module which implements the batch correction algorithm within Seurat.
Language: R - Size: 431 KB - Last synced at: about 2 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
sdomanskyi/DigitalCellSorter
Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
Language: Python - Size: 1020 MB - Last synced at: 23 days ago - Pushed at: about 3 years ago - Stars: 22 - Forks: 10
omicsEye/massSight
An R package for the alignment and scaling of LC-MS metabolomics data
Language: R - Size: 13.5 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 2 - Forks: 0
LTLA/batchelor
Clone of the Bioconductor repository for the batchelor package.
Language: R - Size: 802 KB - Last synced at: 3 months ago - Pushed at: 6 months ago - Stars: 18 - Forks: 7
ebi-gene-expression-group/selectBCM
An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))
Language: R - Size: 129 MB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1
quadbio/simspec
Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
Language: R - Size: 8.08 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 27 - Forks: 3
dpeerlab/Harmony
Harmony framework for connecting scRNA-seq data from discrete time points
Language: Jupyter Notebook - Size: 5.34 MB - Last synced at: 14 days ago - Pushed at: about 1 year ago - Stars: 44 - Forks: 12
GwangWooKim/saVAE
A similarity-assisted variational autoencoder (saVAE) is a new method that adopts similarity information in the framework of the VAE.
Language: Python - Size: 1.7 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 2 - Forks: 0
calvinmccarter/condo-adapter
Confounded Domain Adapter
Language: Jupyter Notebook - Size: 22.2 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 0
computational-metabolomics/sbcms 📦
:warning: :no_entry_sign: [DEPRECATED] see README for more details.
Language: HTML - Size: 2.5 MB - Last synced at: 10 months ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 1
edwinv87/feats
A Python tool for performing downstream analysis on Single-Cell RNA-seq datasets
Language: Python - Size: 8.51 MB - Last synced at: about 6 hours ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 3
pughlab/cancer-scrna-integration
A comparison of data integration methods for single-cell RNA sequencing of cancer samples
Language: Jupyter Notebook - Size: 242 KB - Last synced at: about 2 months ago - Pushed at: almost 3 years ago - Stars: 4 - Forks: 1
fanzhanglab/inflamedtissue_covid19_reference
Code for Zhang, et al, Genome Medicine, 2021. Cross-disease tissue data integration on single-cell transcriptomics
Language: Jupyter Notebook - Size: 11.9 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
Sarah145/batch_correct
Comparison of batch correction methods for scRNA-seq data - basically a clone of BatchBench
Language: R - Size: 214 KB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 1
mandricigor/batman
Batman: Batch effect correction via minimum weight MAtchiNg
Language: Python - Size: 28.3 KB - Last synced at: 10 months ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 1
