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GitHub / ebi-gene-expression-group / selectBCM
An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ebi-gene-expression-group%2FselectBCM
Stars: 2
Forks: 1
Open Issues: 2
License: None
Language: R
Repo Size: 129 MB
Dependencies:
32
Created: almost 4 years ago
Updated: 4 months ago
Last pushed: over 1 year ago
Last synced: about 2 months ago
Topics: batch-correction, bulk-rna-seq, gene-expression, microarray-data-analysis
Files
Dependencies
- R >= 3.5.0 depends
- Biobase * imports
- GGally * imports
- RANN * imports
- RUVSeq * imports
- RUVnormalize * imports
- S4Vectors * imports
- SummarizedExperiment * imports
- WGCNA * imports
- batchelor * imports
- cluster * imports
- colorspace * imports
- data.table * imports
- dplyr * imports
- edgeR * imports
- ggplot2 * imports
- gtools * imports
- hrbrthemes * imports
- igraph * imports
- limma * imports
- lme4 * imports
- magrittr * imports
- matrixStats * imports
- preprocessCore * imports
- purrr * imports
- readr * imports
- statmod * imports
- stringr * imports
- sva * imports
- tibble * imports
- tidytable * imports
- r-base latest build