WGCNA | cran | Package Usage | Ecosyste.ms: Repos

BlishLab/scriabin

Analysis of cell-cell communication at single-cell resolution

* DESCRIPTION

Size: 8.35 MB - Last synced: 3 months ago - Pushed: 9 months ago

ZJUFanLab/scDisProcema

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Size: 3.15 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

gexijin/idepGolem

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Size: 5.08 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

GHDDI-AILab/target-id-by-WGCNA

Target Identification Using the WGCNA Method

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Size: 9.29 MB - Last synced: 12 months ago - Pushed: almost 2 years ago

zhangjunpeng411/miRSM

miRSM: Inferring miRNA sponge modules by integrating expression data and miRNA-target binding information

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Size: 3.8 MB - Last synced: 5 days ago - Pushed: about 2 months ago

CovertLab/SingleCellSequencing

* scde-1.99.0/DESCRIPTION

Size: 36.8 MB - Last synced: 2 months ago - Pushed: over 7 years ago

stefpeschel/NetCoMi

Network construction, analysis, and comparison for microbial compositional data

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Size: 16.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

Hy4m/linkET

Everything is Linkable

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Size: 2.63 MB - Last synced: 2 months ago - Pushed: 12 months ago

sulab-wmu/scPagwas

Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data

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Size: 992 MB - Last synced: 15 days ago - Pushed: about 1 month ago

rseng/rsepedia-analysis

Exploring clustering of research software encyclopedia entries

* _repos/github/IMB-Computational-Genomics-Lab/scGPS/DESCRIPTION

Size: 435 MB - Last synced: 12 days ago - Pushed: 13 days ago

AllenInstitute/scrattch.bigcat

iterative clustering pipeline of big single cell datasets.

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Size: 4.13 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

talgalili/dendextend

Extending R's Dendrogram Functionality

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Size: 59.1 MB - Last synced: 16 days ago - Pushed: 5 months ago

Aurametrix/R

named after the first names of the first two R authors and as a play on the name of S, used for statistical computing and graphics

* GRAPH/MetabNet/DESCRIPTION

Size: 8.58 MB - Last synced: 7 days ago - Pushed: 7 days ago

umerijaz/microbiomeSeq

An R package for microbial community analysis in an environmental context

>= 1.60 DESCRIPTION

Size: 2.67 MB - Last synced: 7 months ago - Pushed: over 3 years ago

uzh/ezRun

An R meta-package for the analysis of Next Generation Sequencing data

* DESCRIPTION

Size: 131 MB - Last synced: 5 days ago - Pushed: 6 days ago

AllenInstitute/mfishtools

Building Gene Sets and Mapping mFISH Data

>= 1.0 DESCRIPTION

Size: 2.07 MB - Last synced: 3 months ago - Pushed: 12 months ago

jgockley62/igraphNetworkExpansion

A sandbox repository for Pathway Commons

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Size: 307 MB - Last synced: 8 months ago - Pushed: about 2 years ago

ManuSetty/SeqGL

SeqGL is a group lasso based algorithm to extract TF sequence signals from ChIP, DNase and ATAC-seq profiles

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Size: 2.47 MB - Last synced: 7 months ago - Pushed: about 3 years ago

Tong-Chen/ImageGP

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Size: 1.62 MB - Last synced: 8 days ago - Pushed: 8 days ago

juanbot/CoExpNets

Co-expression network management based on WGCNA + k-means

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Size: 85.5 MB - Last synced: 7 months ago - Pushed: about 3 years ago

cemordaunt/comethyl

An R package for weighted region comethylation network analysis

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Size: 33.5 MB - Last synced: 8 months ago - Pushed: 8 months ago

Gibbsdavidl/ProCoNA

Protein co-expression network analysis

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Size: 10.4 MB - Last synced: 7 months ago - Pushed: over 10 years ago

cran/nettools

:exclamation: This is a read-only mirror of the CRAN R package repository. nettools — A Network Comparison Framework

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Size: 121 KB - Last synced: 9 months ago - Pushed: over 9 years ago

sahirbhatnagar/eclust

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Size: 9.13 MB - Last synced: 6 months ago - Pushed: almost 7 years ago

liukf10/DDPNA

* DDPNA/DESCRIPTION
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Size: 2.54 MB - Last synced: 11 days ago - Pushed: over 2 years ago

r-pkg-team/r-cran-dendextend

Extending 'dendrogram' Functionality in GNU R

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Last synced: 12 months ago

UEFBiomedicalInformaticsLab/COPS

Clustering algorithms for Omics-driven Patient Stratification

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Size: 88.8 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

mzinkgraf/fastOC

Co-expression network analysis across multiple species.

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Size: 120 MB - Last synced: over 1 year ago - Pushed: over 2 years ago

multiscale/coexpp

Coexpression network creation and manipulation using WGCNA for very large gene sets

>= 1.15 DESCRIPTION

Size: 1.79 MB - Last synced: over 1 year ago

gsx-ucas/QRAP

An R package for analysing RNA-seq Data based shiny

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Size: 290 MB - Last synced: 3 months ago - Pushed: 11 months ago

aliciagp/scCoExpNets

Creation and analysis of single-cell gene co-expression networks

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Size: 128 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

symbioticMe/proBatch

Tools for Batch Effects Diagnostics and Correction

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Size: 4.73 MB - Last synced: 2 months ago - Pushed: about 1 year ago

Functions necessary to analyze and replicate results of biomarker discovery pipeline for SOMALogic 5K Assay proteins associated with incident heart failure. Results are cached and derived from the Atherosclerosis Risk in Communities (ARIC) cohort Visits 5 and 3.

>= 1.69 DESCRIPTION

Size: 2.74 MB - Last synced: over 1 year ago - Pushed: almost 3 years ago

vladpetyuk/vp.misc

custom wrappers of frequently used R code

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Size: 50.5 MB - Last synced: 10 months ago - Pushed: about 1 year ago

r-pkg-team/r-bioc-netsam

>= 1.34.0 DESCRIPTION

Last synced: over 1 year ago

kuppal2/xMSannotator

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Size: 49.9 MB - Last synced: 7 months ago - Pushed: almost 3 years ago

broadinstitute/cdsr_models

Univariate and multivariate models multi-omic analyses

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Size: 324 KB - Last synced: 12 months ago - Pushed: almost 2 years ago

AEBilgrau/Bmisc

Biostatistical miscellaneae

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Size: 1.11 MB - Last synced: about 1 month ago - Pushed: about 5 years ago

cran/ENA

Ensemble Network Aggregation

>= 1.20 DESCRIPTION

Size: 355 KB - Last synced: 9 months ago - Pushed: about 10 years ago

PNNL-Comp-Mass-Spec/MSnSet.utils Fork of vladpetyuk/vp.misc

custom wrappers of frequently used R code

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Size: 65.9 MB - Last synced: 7 days ago - Pushed: 7 days ago

BIGslu/RNAetc

RNA-seq data cleaning of raw counts and metadata

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Size: 673 KB - Last synced: 3 months ago - Pushed: 3 months ago

andreasmock/CVE

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Size: 11.8 MB - Last synced: about 1 year ago - Pushed: about 6 years ago

fbertran/Patterns

Patterns R/Bioconductor package

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Size: 615 MB - Last synced: 20 days ago - Pushed: 24 days ago

filosi/nettools

R package for network analysis

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Size: 327 KB - Last synced: 7 months ago - Pushed: over 6 years ago

spesians2014/gene-expression-pipeline

* GenExR/DESCRIPTION

Size: 7.48 MB - Last synced: over 1 year ago

bioinfo-lapic/lacen_package_test

First version of lacen package, testing R package making features.

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Last synced: 11 months ago

jokergoo/cola

A General Framework for Consensus Partitioning

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Size: 212 MB - Last synced: 19 days ago - Pushed: 3 months ago

biobakery/Macarron

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Size: 2.45 MB - Last synced: 2 months ago - Pushed: 2 months ago

pkimes/sigclust2

tests for statistical significance of clustering

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Size: 4.94 MB - Last synced: 7 months ago - Pushed: over 5 years ago

y-gao/scrattch.bigcat Fork of AllenInstitute/scrattch.bigcat

iterative clustering pipeline of big single cell datasets.

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Size: 4.08 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

xiaolw95/NetMoss2

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Size: 2.84 MB - Last synced: 9 months ago - Pushed: 9 months ago

Tazinho/Advanced-R-Solutions

Set of solutions for the Advanced R programming book

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Size: 33.2 MB - Last synced: 2 months ago - Pushed: 3 months ago

kwanjeeraw/grinn

a Graph database and R package for omic data integration

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Size: 31.6 MB - Last synced: about 1 year ago - Pushed: over 7 years ago

QBRC/ENA

Ensemble Network Aggregation

>= 1.20 ENA/DESCRIPTION

Size: 74.2 KB - Last synced: 2 months ago - Pushed: 4 months ago

PHiort/DrDimont

Drug Response Prediction from Differential Analysis of Multi-omics Networks

* DESCRIPTION

Last synced: over 1 year ago

saralinker/scde Fork of hms-dbmi/scde

R package for analyzing single-cell RNA-seq data

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Size: 9.48 MB - Last synced: 10 months ago - Pushed: over 8 years ago

bbbranjan/scConsensus

An approach combining semi-supervised and unsupervised clustering for cell type annotation in single-cell RNA-seq data

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Size: 12.5 MB - Last synced: 7 months ago - Pushed: about 3 years ago

hms-dbmi/scde

R package for analyzing single-cell RNA-seq data

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Size: 14 MB - Last synced: about 1 month ago - Pushed: 3 months ago

kharchenkolab/scITD

Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition

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Size: 197 MB - Last synced: 4 months ago - Pushed: 8 months ago

AstraZeneca/Omicsfold

Multi-omics data normalisation, model fitting and visualisation.

* OmicsFold/DESCRIPTION

Size: 490 KB - Last synced: 10 months ago - Pushed: about 1 year ago

Sage-Bionetworks/SageBionetworksCoex

Compute gene coexpression based on gene expression data.

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Size: 668 KB - Last synced: about 1 month ago - Pushed: over 10 years ago

nijibabulu/metazoan_synteny

Ancient animal genome architecture reflects cell type identities

* SCS/DESCRIPTION

Size: 81.1 KB - Last synced: 12 months ago - Pushed: almost 5 years ago

CFeregrino/scWGCNA

scWGCNA

* DESCRIPTION

Size: 76.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

ebi-gene-expression-group/selectBCM

An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))

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Size: 129 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

WTaoUMC/RegEnrich

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Size: 2.3 MB - Last synced: 7 months ago - Pushed: almost 3 years ago

jeevb/crumbs

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Size: 815 KB - Last synced: over 1 year ago

xinchoubiology/Rcppsva

Rcpp Integration Surrogate Variable Analysis

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Size: 38 MB - Last synced: about 1 year ago - Pushed: over 8 years ago

cesarcardonau/cavnet

Package for the Creation Analysis and Visualization of Networks. Implemented with several functions specifics to microbial data counts datasets, as this is initially the primary context where the package will be used.

* DESCRIPTION

Size: 17.2 MB - Last synced: over 1 year ago

cran/dendextend

:exclamation: This is a read-only mirror of the CRAN R package repository. dendextend — Extending 'dendrogram' Functionality in R. Homepage: http://talgalili.github.io/dendextend/, https://github.com/talgalili/dendextend/, https://cran.r-project.org/package=dendextend, https://www.r-statistics.com/tag/dendextend/, htt ...

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Size: 28.2 MB - Last synced: 7 months ago - Pushed: about 1 year ago

yunzhang813/rGTExNetwork

Final Project for BST 550 (Fall 2015)

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Size: 1.91 MB - Last synced: about 1 year ago - Pushed: over 8 years ago

AlmaasLab/csdR

Efficient CSD implementation in R

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Size: 1.86 MB - Last synced: 6 months ago - Pushed: over 1 year ago

markdunning/microarray-pipeline

Pipeline for the analysis of Illumina BeadArray data

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Size: 164 KB - Last synced: 7 months ago - Pushed: over 10 years ago

naikai/sake

sake

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Size: 189 MB - Last synced: 3 months ago - Pushed: over 1 year ago

GiulioCostantini/TOMproject

TOM simulation files

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Size: 324 KB - Last synced: 10 months ago - Pushed: about 10 years ago

fabricecolas/R-MethIll

Statistical Analysis Protocol of DNA Methylation Data from Illumina

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Size: 137 KB - Last synced: 9 months ago - Pushed: about 10 years ago

AllenInstitute/scrattch.hicat

Hierarchical, iterative clustering for analysis of transcriptomics data in R

* DESCRIPTION

Size: 154 MB - Last synced: 2 months ago - Pushed: 2 months ago

Sage-Bionetworks/metanetwork

metanetwork

>= 1.46 DESCRIPTION

Size: 8.66 MB - Last synced: about 2 months ago - Pushed: about 2 years ago

systemsimmunology/regenrich

* DESCRIPTION

Size: 13.8 MB - Last synced: over 1 year ago

zhouLabNCSU/C3NA

C3NA is an open-source R Package for co-occurence network anlaysis of the compositional microbial data between two phenotypes.

* DESCRIPTION

Size: 75.5 MB - Last synced: 8 days ago - Pushed: over 1 year ago

an9el/gait2

package to access the GAIT2 project data. The real data is private.

* DESCRIPTION

Last synced: over 1 year ago

lptolik/BioNAR

Biological Network Analysis in R

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Size: 1.89 MB - Last synced: 26 days ago - Pushed: 27 days ago

CaflischLab/CampaRi

Analysis algorithms extracted from the original 'campari' software package. For more information please visit the original documentation.

* DESCRIPTION

Last synced: about 1 year ago

Gustafsson-lab/MODifieR

R package for robust disease module identification

* DESCRIPTION

Last synced: 12 months ago

jianhaizhang/spatialHeatmap

Creating spatial heatmaps from R and Shiny.

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Size: 520 MB - Last synced: about 1 month ago - Pushed: 3 months ago

aushev/vautils

temporary

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Size: 728 KB - Last synced: 23 days ago - Pushed: 23 days ago

seoanezonjic/ExpHunterSuite Fork of Isabelggayte/DEgenesHunter

RNA-seq gene expression analysis suite

* DESCRIPTION

Size: 93.6 MB - Last synced: 12 days ago - Pushed: 12 days ago

prabhakarlab/RCAv2 Fork of GIS-SP-Group/RCA

R package for robust clustering of single cell RNA sequencing data

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Size: 65.8 MB - Last synced: 2 months ago - Pushed: 2 months ago

smorabit/hdWGCNA

High dimensional weighted gene co-expression network analysis

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Size: 232 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

CO-DKFZ/cola

* DESCRIPTION

Size: 187 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

cran/coreheat

:exclamation: This is a read-only mirror of the CRAN R package repository. coreheat — Correlation Heatmaps

* DESCRIPTION

Size: 3.15 MB - Last synced: 9 months ago - Pushed: over 2 years ago

cran/DiPALM

:exclamation: This is a read-only mirror of the CRAN R package repository. DiPALM — Differential Pattern Analysis via Linear Modeling

* DESCRIPTION

Size: 6.54 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

hjanime/microbiome Fork of microbiome/microbiome

microbiome R package

* DESCRIPTION

Size: 42.6 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago

vfey/coreheat

Create correlation heatmaps from a numeric matrix. Optionally, data can be annotated using, e.g., BioMart, clustered and filtered by correlation and/or tree cutting.