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GitHub / CCBR / MAAPster
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CCBR%2FMAAPster
Stars: 9
Forks: 6
Open Issues: 0
License: mit
Language: R
Repo Size: 50.5 MB
Dependencies:
59
Created: over 7 years ago
Updated: 26 days ago
Last pushed: 5 months ago
Last synced: 26 days ago
Topics: batch-correction, differential-expression, microarray-data-analysis, pathway-analysis, quality-control, transcriptomics
Files
Dependencies
- R >= 3.4.4 depends
- Biobase * imports
- GEOquery * imports
- GSEABase * imports
- GSVA * imports
- clariomshumanhttranscriptcluster.db * imports
- clariomshumantranscriptcluster.db * imports
- clariomsmousehttranscriptcluster.db * imports
- clariomsmousetranscriptcluster.db * imports
- clariomsrattranscriptcluster.db * imports
- heatmaply * imports
- hgu133a.db * imports
- hgu133a2.db * imports
- hgu133b.db * imports
- hgu133plus2.db * imports
- hgu219.db * imports
- hgu95av2.db * imports
- hta20transcriptcluster.db * imports
- huex10sttranscriptcluster.db * imports
- hugene10sttranscriptcluster.db * imports
- hugene11sttranscriptcluster.db * imports
- hugene20sttranscriptcluster.db * imports
- limma * imports
- mgu74av2.db * imports
- moe430a.db * imports
- moex10sttranscriptcluster.db * imports
- mogene10sttranscriptcluster.db * imports
- mogene11sttranscriptcluster.db * imports
- mogene20sttranscriptcluster.db * imports
- mouse4302.db * imports
- mouse430a2.db * imports
- oligo * imports
- oligoClasses * imports
- pd.clariom.s.human * imports
- pd.clariom.s.human.ht * imports
- pd.clariom.s.mouse * imports
- pd.clariom.s.mouse.ht * imports
- pd.clariom.s.rat * imports
- pd.hg.u133.plus.2 * imports
- pd.hg.u133a * imports
- pd.hg.u133a.2 * imports
- pd.hg.u133b * imports
- pd.hg.u219 * imports
- pd.hg.u95av2 * imports
- pd.hta.2.0 * imports
- pd.huex.1.0.st.v2 * imports
- pd.hugene.1.0.st.v1 * imports
- pd.hugene.1.1.st.v1 * imports
- pd.hugene.2.0.st * imports
- pd.mg.u74av2 * imports
- pd.moe430a * imports
- pd.moex.1.0.st.v1 * imports
- pd.mogene.1.0.st.v1 * imports
- pd.mogene.1.1.st.v1 * imports
- pd.mogene.2.0.st * imports
- pd.mouse430.2 * imports
- pd.mouse430a.2 * imports
- pheatmap * imports
- rgl * imports