Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: cran: GSVA
View more package details: https://packages.ecosyste.ms/registries/cran.r-project.org/packages/GSVA
Dependent Repos 66
rseng/rsepedia-analysis
Exploring clustering of research software encyclopedia entries- * _repos/github/Dulab2020/ARMT/DESCRIPTION
Size: 435 MB - Last synced: 25 days ago - Pushed: 26 days ago
huayc09/SeuratExtend
- * DESCRIPTION
Size: 146 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
jysonganan/methylDeConv
- * DESCRIPTION
Size: 1.26 MB - Last synced: 8 months ago - Pushed: almost 2 years ago
mpallocc/auto-go
- * DESCRIPTION
Size: 58.3 MB - Last synced: about 3 hours ago - Pushed: 3 months ago
romanhaa/Cerebro
Visualization of scRNA-seq data.- >= 1.30.0 source/Windows/R-Portable-Win/library/cerebroApp/DESCRIPTION
Size: 2.99 GB - Last synced: about 9 hours ago - Pushed: over 1 year ago
ozlemkaradeniz/PathAnalyser
R-package for assessment of ER & HER2 pathways activity in breast cancer transcriptomic datasets- * DESCRIPTION
Size: 60.3 MB - Last synced: 7 months ago - Pushed: about 2 years ago
Yunuuuu/biomisc
- * DESCRIPTION
Size: 62.6 MB - Last synced: about 7 hours ago - Pushed: about 9 hours ago
romanhaa/cerebroApp
R package containing the Cerebro application.- >= 1.30.0 DESCRIPTION
Size: 22.4 MB - Last synced: 8 months ago - Pushed: over 2 years ago
montilab/K2Taxonomer
A tool for the multi-resolution characterization of molecular taxonomies in bulk and single-cell omics data- * DESCRIPTION
Size: 24.8 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
dviraran/SingleR
SingleR: Single-cell RNA-seq cell types Recognition (legacy version)- * DESCRIPTION
Size: 893 MB - Last synced: about 11 hours ago - Pushed: almost 4 years ago
psychemistz/ovltools
R package to compute distribution overlap between two sample distributions- * DESCRIPTION
Size: 3.85 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
AlexanderKirchmair/datamisc
Miscellaneous functions for basic data analysis used by myself- * DESCRIPTION
Size: 405 KB - Last synced: about 1 month ago - Pushed: about 1 month ago
qzhang503/proteoQ
Processing and analysis of proteomics data- * DESCRIPTION
Size: 531 MB - Last synced: 3 months ago - Pushed: 3 months ago
saezlab/decoupleR
R package to infer biological activities from omics data using a collection of methods.- * DESCRIPTION
Size: 37 MB - Last synced: 25 days ago - Pushed: about 2 months ago
hanjunwei-lab/SubtypeDrug
Prioritization of Candidate Cancer Subtype Specific Drugs- * DESCRIPTION
Size: 3.7 MB - Last synced: 21 days ago - Pushed: 5 months ago
igordot/clustermole
Unbiased single-cell transcriptomic data cell type identification- >= 1.26.0 DESCRIPTION
Size: 17.8 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
wguo-research/scCancer
A package for automated processing of single cell RNA-seq data in cancer- * DESCRIPTION
Size: 162 MB - Last synced: 6 months ago - Pushed: over 1 year ago
Tang-RH/sciNMF
single cell individual non-negative matrix factorization- * DESCRIPTION
Size: 90.2 MB - Last synced: 2 days ago - Pushed: 3 days ago
UEFBiomedicalInformaticsLab/COPS
Clustering algorithms for Omics-driven Patient Stratification- * DESCRIPTION
Size: 89.5 MB - Last synced: 1 day ago - Pushed: 2 days ago
oriolarques/GEGVIC
A workflow to analyse Gene Expression, Genetic Variations and Immune cell Composition of tumour samples using Next Generation Sequencing data- * DESCRIPTION
Size: 33.5 MB - Last synced: over 1 year ago - Pushed: over 1 year ago
yingyonghui/CommPath
R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics- * DESCRIPTION
Size: 671 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
wu-yc/scMetabolism
Quantifying metabolism activity at the single-cell resolution- * DESCRIPTION
Size: 931 KB - Last synced: 7 months ago - Pushed: 7 months ago
BaderLab/Tempora
Pathway-based trajectory inference method for time-series scRNAseq data- * DESCRIPTION
Size: 356 KB - Last synced: 3 months ago - Pushed: about 3 years ago
cran/compendiumdb
:exclamation: This is a read-only mirror of the CRAN R package repository. compendiumdb — Tools for Retrieval and Storage of Functional Genomics Data. Homepage: http://wiki.bioinformaticslaboratory.nl/foswiki/bin/view/BioLab/CompendiumDB- * DESCRIPTION
Size: 1.02 MB - Last synced: 8 months ago - Pushed: over 8 years ago
caanene1/Decosus
Consensus deconvolution and abudance- * DESCRIPTION
Size: 3.96 MB - Last synced: 4 months ago - Pushed: 4 months ago
dibbelab/gficf
An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization- * DESCRIPTION
Size: 4.89 MB - Last synced: 11 months ago - Pushed: over 1 year ago
Sue9104/scrna
- * scrna-recom/DESCRIPTION
Size: 55.5 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
dviraran/xCell
Cell types enrichment analysis- * DESCRIPTION
Size: 18.3 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
whwanglab/PDAC
- * src/R/hydra/dspNgs/DESCRIPTION
Size: 61.7 MB - Last synced: over 1 year ago - Pushed: about 2 years ago
xmc811/Scillus
R Package for Single-Cell Dataset Processing and Visualization- * DESCRIPTION
Size: 11.1 MB - Last synced: 3 months ago - Pushed: almost 3 years ago
elsayed-lab/hpgltools
A collection of R functions to aid in host-pathogen genomic research- * DESCRIPTION
Size: 555 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
lianos/sparrow
Take command of your set enrichment analyses.- * DESCRIPTION
Size: 398 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
ncborcherding/escape
Easy single cell analysis platform for enrichment- * DESCRIPTION
Size: 4.57 MB - Last synced: 27 days ago - Pushed: 28 days ago
lydiaMyr/ImmuCellAI
ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset including RNA-Seq and microarray data- * DESCRIPTION
Size: 85.6 MB - Last synced: over 1 year ago - Pushed: over 1 year ago
cran/MM2S
:exclamation: This is a read-only mirror of the CRAN R package repository. MM2S — Single-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines. Homepage: https://scfbm.biomedcentral.com/articles/10.1186/s13029-016-0053-y, http://www.sciencedirect.com/science/article/pii/S0888754315000774, http://www.pmgenomics.ca/bhklab/software/mm2s- >= 1.13.1 DESCRIPTION
Size: 3.99 MB - Last synced: 8 months ago - Pushed: over 4 years ago
cansysbio/ConsensusTME
ConsensusTME Gene Sets and R Script- * DESCRIPTION
Size: 4.4 MB - Last synced: 3 days ago - Pushed: 3 days ago
northomics/metareport
automatic report generation from metalab result- * DESCRIPTION
Size: 53 MB - Last synced: over 1 year ago - Pushed: about 2 years ago
jyyulab/NetBID
Data-driven Network-based Bayesian Inference of Drivers- >= 1.22.4 DESCRIPTION
Size: 360 MB - Last synced: 2 months ago - Pushed: 2 months ago
kevincjnixon/BinfTools
Useful R functions for Multi-omics analyses- * DESCRIPTION
Size: 5.55 MB - Last synced: 10 months ago - Pushed: 10 months ago
SydneyBioX/scFeatures
- * DESCRIPTION
Size: 213 MB - Last synced: about 1 month ago - Pushed: 3 months ago
lydiaMyr/ImmuCellAI-mouse
- * DESCRIPTION
Size: 52.6 MB - Last synced: over 1 year ago - Pushed: almost 2 years ago
salzcamino/singleCellTK Fork of compbiomed/singleCellTK
Interactively Analyze scRNA-Seq Data- >= 1.26.0 DESCRIPTION
Size: 699 MB - Last synced: 5 days ago - Pushed: 6 days ago
SmritiChawla/PreSig
- * DESCRIPTION
Size: 322 MB - Last synced: over 1 year ago - Pushed: over 1 year ago
CaluraLab/signifinder
- * DESCRIPTION
Size: 21.3 MB - Last synced: 21 days ago - Pushed: about 2 months ago
pmcc-modil/BinfTools Fork of kevincjnixon/BinfTools
Useful R functions for multi-omic analyses- * DESCRIPTION
Size: 5.55 MB - Last synced: 10 months ago - Pushed: 10 months ago
xlucpu/MOVICS
Multi-Omics integration and VIsualization in Cancer Subtyping- * DESCRIPTION
Size: 84.4 MB - Last synced: 8 months ago - Pushed: almost 3 years ago
Dulab2020/scWizard
- * DESCRIPTION
Size: 50 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
zgyaru/PASBench
- * DESCRIPTION
Size: 96.1 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
wejlab/TBSignatureProfiler
Profile RNA-seq data using published TB gene signatures- * DESCRIPTION
Size: 15.4 MB - Last synced: 19 days ago - Pushed: about 1 month ago
peachone/deconvBench
A tool for approaches evaluation of cell fraction estimation- * DESCRIPTION
Size: 94 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
Bin-Chen-Lab/octad
Open Cancer TherApeutic Discovery- * DESCRIPTION
Size: 38.7 MB - Last synced: 8 months ago - Pushed: 9 months ago
WXlab-NJMU/scrna-recom
collected resource for scRNA-seq analysis- * scrna-recom/DESCRIPTION
Size: 88.5 MB - Last synced: 11 months ago - Pushed: 11 months ago
liulab/rmaups
Model-based analysis of ubiquitin-proteome system based protein degradation.- * DESCRIPTION
Size: 5.87 MB - Last synced: over 1 year ago
swsoyee/webSCST
A web tool for single-cell RNA-seq data and spatial transcriptome data integration- * DESCRIPTION
Size: 1.44 GB - Last synced: about 1 month ago - Pushed: over 1 year ago
alebarberis/sigscores
Compute Summary Scores for Gene Signatures- * DESCRIPTION
Size: 3.79 MB - Last synced: 20 days ago - Pushed: over 1 year ago
nbay13/biorunr
An R package for running bioinformatic analyses including differential expression, geneset enrichment, and data visualization- * DESCRIPTION
Size: 118 KB - Last synced: 19 days ago - Pushed: 19 days ago
compbiomed/singleCellTK
Interactively analyze single cell genomic data- >= 1.26.0 DESCRIPTION
Size: 699 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
kiklata/scMetabolism Fork of wu-yc/scMetabolism
Quantifying metabolism activity at the single-cell resolution- * DESCRIPTION
Size: 945 KB - Last synced: 12 months ago - Pushed: over 1 year ago
czythu/scCancer Fork of wguo-research/scCancer
scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution- * DESCRIPTION
Size: 202 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
gambalab/gficf Fork of dibbelab/gficf
An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization- * DESCRIPTION
Size: 36.9 MB - Last synced: 10 months ago - Pushed: 10 months ago
rz2333/singleCellTK Fork of compbiomed/singleCellTK
Interactively Analyze scRNA-Seq Data- >= 1.26.0 DESCRIPTION
Size: 436 MB - Last synced: over 1 year ago - Pushed: over 1 year ago
npervaiz/singleCellTK Fork of compbiomed/singleCellTK
Interactively Analyze scRNA-Seq Data- >= 1.26.0 DESCRIPTION
Size: 677 MB - Last synced: 5 months ago - Pushed: 5 months ago
abelew/hpgltools Fork of elsayed-lab/hpgltools
A collection of R functions to aid in host-pathogen genomic research- * DESCRIPTION
Size: 553 MB - Last synced: 20 days ago - Pushed: 21 days ago
irzamsarfraz/singleCellTK Fork of compbiomed/singleCellTK
Interactively Analyze scRNA-Seq Data- >= 1.26.0 DESCRIPTION
Size: 665 MB - Last synced: 5 months ago - Pushed: 5 months ago
gusef/tSNEfier
An interactive tool to explore tSNE plots- * DESCRIPTION
Size: 3.2 MB - Last synced: about 2 months ago - Pushed: about 6 years ago
cran/clustermole
:exclamation: This is a read-only mirror of the CRAN R package repository. clustermole — Unbiased Single-Cell Transcriptomic Data Cell Type Identification. Homepage: https://igordot.github.io/clustermole/ Report bugs for this package: https://github.com/igordot/clustermole/issues- >= 1.26.0 DESCRIPTION
Size: 1.91 MB - Last synced: 5 months ago - Pushed: 5 months ago
Shicheng-Guo/crmSubpathway
Identifying cancer-related metabolic subpathways- * crmSubpathway/DESCRIPTION
Size: 1.44 MB - Last synced: 10 months ago - Pushed: almost 4 years ago
tsofiya/xCell2-old
- * xCell/DESCRIPTION
Size: 17.8 MB - Last synced: over 1 year ago - Pushed: about 3 years ago
xiayh17/RNAseqStat2
- * DESCRIPTION
Size: 503 MB - Last synced: over 1 year ago - Pushed: over 1 year ago
montilab/CaDrA.shiny
A web interface for interacting with the R package CaDrA- * DESCRIPTION
Size: 7.56 MB - Last synced: 6 months ago - Pushed: 6 months ago
cran/SubtypeDrug
:exclamation: This is a read-only mirror of the CRAN R package repository. SubtypeDrug — Prioritization of Candidate Cancer Subtype Specific Drugs Report bugs for this package: https://github.com/hanjunwei-lab/SubtypeDrug/issues- * DESCRIPTION
Size: 4.87 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
CCBR/MAAPster
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data- * mpstr/DESCRIPTION
Size: 50.5 MB - Last synced: 24 days ago - Pushed: 5 months ago
cran/autoGO
:exclamation: This is a read-only mirror of the CRAN R package repository. autoGO — Auto-GO: Reproducible, Robust and High Quality Ontology Enrichment Visualizations Report bugs for this package: https://github.com/mpallocc/auto-go/issues- * DESCRIPTION
Size: 3.05 MB - Last synced: 10 months ago - Pushed: over 1 year ago
MolecularPathologyLab/MmCMS
- >= 1.26.0 DESCRIPTION
- >= 1.26.0 DESCRIPTION
Size: 5.14 MB - Last synced: 8 months ago - Pushed: 8 months ago
sidmall/PDSclassifier
- >= 1.26.0 DESCRIPTION
Size: 9.67 MB - Last synced: 5 months ago - Pushed: 5 months ago
cran/sigQC
:exclamation: This is a read-only mirror of the CRAN R package repository. sigQC — Quality Control Metrics for Gene Signatures- * DESCRIPTION
Size: 2.86 MB - Last synced: 8 months ago - Pushed: about 1 year ago
saisaitian/TCMR
- * DESCRIPTION
Size: 536 MB - Last synced: 10 months ago - Pushed: almost 2 years ago
XSLiuLab/GSVAutils
- * DESCRIPTION
Size: 1.65 MB - Last synced: over 1 year ago - Pushed: over 4 years ago
WubingZhang/rMAUPS
Model-based Analysis of Ubiquitin-Proteasome System- * DESCRIPTION
Size: 16.8 MB - Last synced: over 1 year ago - Pushed: over 2 years ago
FWYX/Circadian-clock-score
- * CCS/DESCRIPTION
Size: 2.93 KB - Last synced: 12 months ago - Pushed: almost 2 years ago
wilsonlabgroup/scMappR
the scMappR developmental package- * DESCRIPTION
Size: 15.9 MB - Last synced: 8 months ago - Pushed: 12 months ago
GenomicsNX/ConsensusTME Fork of cansysbio/ConsensusTME
ConsensusTME Gene Sets and R Script- * DESCRIPTION
Size: 4.39 MB - Last synced: 2 months ago - Pushed: about 4 years ago
GenomicsNX/MicroArrayPipeline Fork of CCBR/MAAPster
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data- * mpstr/DESCRIPTION
Size: 50.5 MB - Last synced: 2 months ago - Pushed: over 3 years ago
GenomicsNX/SingleR Fork of dviraran/SingleR
SingleR: Single-cell RNA-seq cell types Recognition (legacy version)- * DESCRIPTION
Size: 893 MB - Last synced: 2 months ago - Pushed: almost 4 years ago
GenomicsNX/singleCellTK Fork of compbiomed/singleCellTK
Interactively analyze single cell genomic data- >= 1.26.0 DESCRIPTION
Size: 399 MB - Last synced: 2 months ago - Pushed: over 2 years ago
GenomicsNX/ARMT Fork of Dulab2020/ARMT
- * DESCRIPTION
Size: 18.3 MB - Last synced: 2 months ago - Pushed: over 2 years ago
dviraran/Parainflammation
- * DESCRIPTION
Size: 17.4 MB - Last synced: 11 months ago - Pushed: over 5 years ago
bug1303/Scillus Fork of xmc811/Scillus
R Package for Single-Cell Dataset Processing and Visualization- * DESCRIPTION
Size: 11.2 MB - Last synced: 11 months ago - Pushed: over 2 years ago
trintala/COPS_backup Fork of UEFBiomedicalInformaticsLab/COPS
Clustering algorithms for Omics-driven Patient Stratification- * DESCRIPTION
Size: 6.35 MB - Last synced: 11 months ago - Pushed: over 1 year ago
phoebee-h/SingleR Fork of dviraran/SingleR
SingleR: Single-cell RNA-seq cell types Recognition (legacy version)- * DESCRIPTION
Size: 893 MB - Last synced: 10 months ago - Pushed: almost 5 years ago
royfrancis/cerebroApp Fork of romanhaa/cerebroApp
R package containing the Cerebro application.- >= 1.30.0 DESCRIPTION
Size: 22.4 MB - Last synced: 10 months ago - Pushed: over 2 years ago
royfrancis/Cerebro Fork of romanhaa/Cerebro
Visualization of scRNA-seq data.- >= 1.30.0 source/Windows/R-Portable-Win/library/cerebroApp/DESCRIPTION
Size: 2.99 GB - Last synced: 10 months ago - Pushed: over 1 year ago
mdmkac1/SingleR Fork of dviraran/SingleR
SingleR: Single-cell RNA-seq cell types Recognition (legacy version)- * DESCRIPTION
Size: 893 MB - Last synced: 10 months ago - Pushed: almost 4 years ago
gnvalbuena/ISCindex
An R package to calculate an intestinal stem cell index from gene expression profiling data- * DESCRIPTION
Size: 51.8 KB - Last synced: 10 months ago - Pushed: 10 months ago
monovich/xCell Fork of dviraran/xCell
Cell types enrichment analysis- * DESCRIPTION
Size: 18.3 MB - Last synced: 10 months ago - Pushed: almost 5 years ago