Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: cran: GSVA

View more package details: https://packages.ecosyste.ms/registries/cran.r-project.org/packages/GSVA

Dependent Repos 66

rseng/rsepedia-analysis
Exploring clustering of research software encyclopedia entries
  • * _repos/github/Dulab2020/ARMT/DESCRIPTION

Size: 435 MB - Last synced: 25 days ago - Pushed: 26 days ago

huayc09/SeuratExtend
  • * DESCRIPTION

Size: 146 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

jysonganan/methylDeConv
  • * DESCRIPTION

Size: 1.26 MB - Last synced: 8 months ago - Pushed: almost 2 years ago

mpallocc/auto-go
  • * DESCRIPTION

Size: 58.3 MB - Last synced: about 3 hours ago - Pushed: 3 months ago

romanhaa/Cerebro
Visualization of scRNA-seq data.
  • >= 1.30.0 source/Windows/R-Portable-Win/library/cerebroApp/DESCRIPTION

Size: 2.99 GB - Last synced: about 9 hours ago - Pushed: over 1 year ago

ozlemkaradeniz/PathAnalyser
R-package for assessment of ER & HER2 pathways activity in breast cancer transcriptomic datasets
  • * DESCRIPTION

Size: 60.3 MB - Last synced: 7 months ago - Pushed: about 2 years ago

Yunuuuu/biomisc
  • * DESCRIPTION

Size: 62.6 MB - Last synced: about 7 hours ago - Pushed: about 9 hours ago

romanhaa/cerebroApp
R package containing the Cerebro application.
  • >= 1.30.0 DESCRIPTION

Size: 22.4 MB - Last synced: 8 months ago - Pushed: over 2 years ago

montilab/K2Taxonomer
A tool for the multi-resolution characterization of molecular taxonomies in bulk and single-cell omics data
  • * DESCRIPTION

Size: 24.8 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

dviraran/SingleR
SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  • * DESCRIPTION

Size: 893 MB - Last synced: about 11 hours ago - Pushed: almost 4 years ago

psychemistz/ovltools
R package to compute distribution overlap between two sample distributions
  • * DESCRIPTION

Size: 3.85 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

AlexanderKirchmair/datamisc
Miscellaneous functions for basic data analysis used by myself
  • * DESCRIPTION

Size: 405 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

qzhang503/proteoQ
Processing and analysis of proteomics data
  • * DESCRIPTION

Size: 531 MB - Last synced: 3 months ago - Pushed: 3 months ago

saezlab/decoupleR
R package to infer biological activities from omics data using a collection of methods.
  • * DESCRIPTION

Size: 37 MB - Last synced: 25 days ago - Pushed: about 2 months ago

hanjunwei-lab/SubtypeDrug
Prioritization of Candidate Cancer Subtype Specific Drugs
  • * DESCRIPTION

Size: 3.7 MB - Last synced: 21 days ago - Pushed: 5 months ago

igordot/clustermole
Unbiased single-cell transcriptomic data cell type identification
  • >= 1.26.0 DESCRIPTION

Size: 17.8 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

wguo-research/scCancer
A package for automated processing of single cell RNA-seq data in cancer
  • * DESCRIPTION

Size: 162 MB - Last synced: 6 months ago - Pushed: over 1 year ago

Tang-RH/sciNMF
single cell individual non-negative matrix factorization
  • * DESCRIPTION

Size: 90.2 MB - Last synced: 2 days ago - Pushed: 3 days ago

UEFBiomedicalInformaticsLab/COPS
Clustering algorithms for Omics-driven Patient Stratification
  • * DESCRIPTION

Size: 89.5 MB - Last synced: 1 day ago - Pushed: 2 days ago

oriolarques/GEGVIC
A workflow to analyse Gene Expression, Genetic Variations and Immune cell Composition of tumour samples using Next Generation Sequencing data
  • * DESCRIPTION

Size: 33.5 MB - Last synced: over 1 year ago - Pushed: over 1 year ago

yingyonghui/CommPath
R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics
  • * DESCRIPTION

Size: 671 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

wu-yc/scMetabolism
Quantifying metabolism activity at the single-cell resolution
  • * DESCRIPTION

Size: 931 KB - Last synced: 7 months ago - Pushed: 7 months ago

BaderLab/Tempora
Pathway-based trajectory inference method for time-series scRNAseq data
  • * DESCRIPTION

Size: 356 KB - Last synced: 3 months ago - Pushed: about 3 years ago

r-pkg-team/r-bioc-decoupler
  • * DESCRIPTION

Last synced: about 1 year ago

cran/compendiumdb
:exclamation: This is a read-only mirror of the CRAN R package repository. compendiumdb — Tools for Retrieval and Storage of Functional Genomics Data. Homepage: http://wiki.bioinformaticslaboratory.nl/foswiki/bin/view/BioLab/CompendiumDB
  • * DESCRIPTION

Size: 1.02 MB - Last synced: 8 months ago - Pushed: over 8 years ago

caanene1/Decosus
Consensus deconvolution and abudance
  • * DESCRIPTION

Size: 3.96 MB - Last synced: 4 months ago - Pushed: 4 months ago

dibbelab/gficf
An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  • * DESCRIPTION

Size: 4.89 MB - Last synced: 11 months ago - Pushed: over 1 year ago

Sue9104/scrna
  • * scrna-recom/DESCRIPTION

Size: 55.5 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

dviraran/xCell
Cell types enrichment analysis
  • * DESCRIPTION

Size: 18.3 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

whwanglab/PDAC
  • * src/R/hydra/dspNgs/DESCRIPTION

Size: 61.7 MB - Last synced: over 1 year ago - Pushed: about 2 years ago

xmc811/Scillus
R Package for Single-Cell Dataset Processing and Visualization
  • * DESCRIPTION

Size: 11.1 MB - Last synced: 3 months ago - Pushed: almost 3 years ago

elsayed-lab/hpgltools
A collection of R functions to aid in host-pathogen genomic research
  • * DESCRIPTION

Size: 555 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

lianos/sparrow
Take command of your set enrichment analyses.
  • * DESCRIPTION

Size: 398 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

ncborcherding/escape
Easy single cell analysis platform for enrichment
  • * DESCRIPTION

Size: 4.57 MB - Last synced: 27 days ago - Pushed: 28 days ago

lydiaMyr/ImmuCellAI
ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset including RNA-Seq and microarray data
  • * DESCRIPTION

Size: 85.6 MB - Last synced: over 1 year ago - Pushed: over 1 year ago

cran/MM2S
:exclamation: This is a read-only mirror of the CRAN R package repository. MM2S — Single-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines. Homepage: https://scfbm.biomedcentral.com/articles/10.1186/s13029-016-0053-y, http://www.sciencedirect.com/science/article/pii/S0888754315000774, http://www.pmgenomics.ca/bhklab/software/mm2s
  • >= 1.13.1 DESCRIPTION

Size: 3.99 MB - Last synced: 8 months ago - Pushed: over 4 years ago

cansysbio/ConsensusTME
ConsensusTME Gene Sets and R Script
  • * DESCRIPTION

Size: 4.4 MB - Last synced: 3 days ago - Pushed: 3 days ago

northomics/metareport
automatic report generation from metalab result
  • * DESCRIPTION

Size: 53 MB - Last synced: over 1 year ago - Pushed: about 2 years ago

jyyulab/NetBID
Data-driven Network-based Bayesian Inference of Drivers
  • >= 1.22.4 DESCRIPTION

Size: 360 MB - Last synced: 2 months ago - Pushed: 2 months ago

kevincjnixon/BinfTools
Useful R functions for Multi-omics analyses
  • * DESCRIPTION

Size: 5.55 MB - Last synced: 10 months ago - Pushed: 10 months ago

SydneyBioX/scFeatures
  • * DESCRIPTION

Size: 213 MB - Last synced: about 1 month ago - Pushed: 3 months ago

lydiaMyr/ImmuCellAI-mouse
  • * DESCRIPTION

Size: 52.6 MB - Last synced: over 1 year ago - Pushed: almost 2 years ago

salzcamino/singleCellTK Fork of compbiomed/singleCellTK
Interactively Analyze scRNA-Seq Data
  • >= 1.26.0 DESCRIPTION

Size: 699 MB - Last synced: 5 days ago - Pushed: 6 days ago

SmritiChawla/PreSig
  • * DESCRIPTION

Size: 322 MB - Last synced: over 1 year ago - Pushed: over 1 year ago

CaluraLab/signifinder
  • * DESCRIPTION

Size: 21.3 MB - Last synced: 21 days ago - Pushed: about 2 months ago

pmcc-modil/BinfTools Fork of kevincjnixon/BinfTools
Useful R functions for multi-omic analyses
  • * DESCRIPTION

Size: 5.55 MB - Last synced: 10 months ago - Pushed: 10 months ago

xlucpu/MOVICS
Multi-Omics integration and VIsualization in Cancer Subtyping
  • * DESCRIPTION

Size: 84.4 MB - Last synced: 8 months ago - Pushed: almost 3 years ago

Dulab2020/scWizard
  • * DESCRIPTION

Size: 50 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

zgyaru/PASBench
  • * DESCRIPTION

Size: 96.1 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

wejlab/TBSignatureProfiler
Profile RNA-seq data using published TB gene signatures
  • * DESCRIPTION

Size: 15.4 MB - Last synced: 19 days ago - Pushed: about 1 month ago

peachone/deconvBench
A tool for approaches evaluation of cell fraction estimation
  • * DESCRIPTION

Size: 94 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

Bin-Chen-Lab/octad
Open Cancer TherApeutic Discovery
  • * DESCRIPTION

Size: 38.7 MB - Last synced: 8 months ago - Pushed: 9 months ago

WXlab-NJMU/scrna-recom
collected resource for scRNA-seq analysis
  • * scrna-recom/DESCRIPTION

Size: 88.5 MB - Last synced: 11 months ago - Pushed: 11 months ago

tsheffield/httrpathway
  • * httrpathway/DESCRIPTION

Size: 12 MB - Last synced: over 1 year ago

liulab/rmaups
Model-based analysis of ubiquitin-proteome system based protein degradation.
  • * DESCRIPTION

Size: 5.87 MB - Last synced: over 1 year ago

swsoyee/webSCST
A web tool for single-cell RNA-seq data and spatial transcriptome data integration
  • * DESCRIPTION

Size: 1.44 GB - Last synced: about 1 month ago - Pushed: over 1 year ago

alebarberis/sigscores
Compute Summary Scores for Gene Signatures
  • * DESCRIPTION

Size: 3.79 MB - Last synced: 20 days ago - Pushed: over 1 year ago

nbay13/biorunr
An R package for running bioinformatic analyses including differential expression, geneset enrichment, and data visualization
  • * DESCRIPTION

Size: 118 KB - Last synced: 19 days ago - Pushed: 19 days ago

compbiomed/singleCellTK
Interactively analyze single cell genomic data
  • >= 1.26.0 DESCRIPTION

Size: 699 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

kiklata/scMetabolism Fork of wu-yc/scMetabolism
Quantifying metabolism activity at the single-cell resolution
  • * DESCRIPTION

Size: 945 KB - Last synced: 12 months ago - Pushed: over 1 year ago

czythu/scCancer Fork of wguo-research/scCancer
scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution
  • * DESCRIPTION

Size: 202 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

gambalab/gficf Fork of dibbelab/gficf
An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  • * DESCRIPTION

Size: 36.9 MB - Last synced: 10 months ago - Pushed: 10 months ago

rz2333/singleCellTK Fork of compbiomed/singleCellTK
Interactively Analyze scRNA-Seq Data
  • >= 1.26.0 DESCRIPTION

Size: 436 MB - Last synced: over 1 year ago - Pushed: over 1 year ago

npervaiz/singleCellTK Fork of compbiomed/singleCellTK
Interactively Analyze scRNA-Seq Data
  • >= 1.26.0 DESCRIPTION

Size: 677 MB - Last synced: 5 months ago - Pushed: 5 months ago

abelew/hpgltools Fork of elsayed-lab/hpgltools
A collection of R functions to aid in host-pathogen genomic research
  • * DESCRIPTION

Size: 553 MB - Last synced: 20 days ago - Pushed: 21 days ago

irzamsarfraz/singleCellTK Fork of compbiomed/singleCellTK
Interactively Analyze scRNA-Seq Data
  • >= 1.26.0 DESCRIPTION

Size: 665 MB - Last synced: 5 months ago - Pushed: 5 months ago

gusef/tSNEfier
An interactive tool to explore tSNE plots
  • * DESCRIPTION

Size: 3.2 MB - Last synced: about 2 months ago - Pushed: about 6 years ago

cran/clustermole
:exclamation: This is a read-only mirror of the CRAN R package repository. clustermole — Unbiased Single-Cell Transcriptomic Data Cell Type Identification. Homepage: https://igordot.github.io/clustermole/ Report bugs for this package: https://github.com/igordot/clustermole/issues
  • >= 1.26.0 DESCRIPTION

Size: 1.91 MB - Last synced: 5 months ago - Pushed: 5 months ago

Shicheng-Guo/crmSubpathway
Identifying cancer-related metabolic subpathways
  • * crmSubpathway/DESCRIPTION

Size: 1.44 MB - Last synced: 10 months ago - Pushed: almost 4 years ago

tsofiya/xCell2-old
  • * xCell/DESCRIPTION

Size: 17.8 MB - Last synced: over 1 year ago - Pushed: about 3 years ago

xiayh17/RNAseqStat2
  • * DESCRIPTION

Size: 503 MB - Last synced: over 1 year ago - Pushed: over 1 year ago

montilab/CaDrA.shiny
A web interface for interacting with the R package CaDrA
  • * DESCRIPTION

Size: 7.56 MB - Last synced: 6 months ago - Pushed: 6 months ago

cran/SubtypeDrug
:exclamation: This is a read-only mirror of the CRAN R package repository. SubtypeDrug — Prioritization of Candidate Cancer Subtype Specific Drugs Report bugs for this package: https://github.com/hanjunwei-lab/SubtypeDrug/issues
  • * DESCRIPTION

Size: 4.87 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

CCBR/MAAPster
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data
  • * mpstr/DESCRIPTION

Size: 50.5 MB - Last synced: 24 days ago - Pushed: 5 months ago

cran/autoGO
:exclamation: This is a read-only mirror of the CRAN R package repository. autoGO — Auto-GO: Reproducible, Robust and High Quality Ontology Enrichment Visualizations Report bugs for this package: https://github.com/mpallocc/auto-go/issues
  • * DESCRIPTION

Size: 3.05 MB - Last synced: 10 months ago - Pushed: over 1 year ago

MolecularPathologyLab/MmCMS
  • >= 1.26.0 DESCRIPTION
  • >= 1.26.0 DESCRIPTION

Size: 5.14 MB - Last synced: 8 months ago - Pushed: 8 months ago

sidmall/PDSclassifier
  • >= 1.26.0 DESCRIPTION

Size: 9.67 MB - Last synced: 5 months ago - Pushed: 5 months ago

cran/sigQC
:exclamation: This is a read-only mirror of the CRAN R package repository. sigQC — Quality Control Metrics for Gene Signatures
  • * DESCRIPTION

Size: 2.86 MB - Last synced: 8 months ago - Pushed: about 1 year ago

saisaitian/TCMR
  • * DESCRIPTION

Size: 536 MB - Last synced: 10 months ago - Pushed: almost 2 years ago

XSLiuLab/GSVAutils
  • * DESCRIPTION

Size: 1.65 MB - Last synced: over 1 year ago - Pushed: over 4 years ago

WubingZhang/rMAUPS
Model-based Analysis of Ubiquitin-Proteasome System
  • * DESCRIPTION

Size: 16.8 MB - Last synced: over 1 year ago - Pushed: over 2 years ago

FWYX/Circadian-clock-score
  • * CCS/DESCRIPTION

Size: 2.93 KB - Last synced: 12 months ago - Pushed: almost 2 years ago

Dulab2020/ARMT
  • * DESCRIPTION

Size: 18.1 MB - Last synced: 8 months ago - Pushed: over 1 year ago

rbentham/MCbiclust
  • * DESCRIPTION

Size: 9.49 MB - Last synced: 4 months ago - Pushed: 4 months ago

wilsonlabgroup/scMappR
the scMappR developmental package
  • * DESCRIPTION

Size: 15.9 MB - Last synced: 8 months ago - Pushed: 12 months ago

GenomicsNX/ConsensusTME Fork of cansysbio/ConsensusTME
ConsensusTME Gene Sets and R Script
  • * DESCRIPTION

Size: 4.39 MB - Last synced: 2 months ago - Pushed: about 4 years ago

GenomicsNX/MicroArrayPipeline Fork of CCBR/MAAPster
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data
  • * mpstr/DESCRIPTION

Size: 50.5 MB - Last synced: 2 months ago - Pushed: over 3 years ago

GenomicsNX/SingleR Fork of dviraran/SingleR
SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  • * DESCRIPTION

Size: 893 MB - Last synced: 2 months ago - Pushed: almost 4 years ago

GenomicsNX/singleCellTK Fork of compbiomed/singleCellTK
Interactively analyze single cell genomic data
  • >= 1.26.0 DESCRIPTION

Size: 399 MB - Last synced: 2 months ago - Pushed: over 2 years ago

GenomicsNX/ARMT Fork of Dulab2020/ARMT
  • * DESCRIPTION

Size: 18.3 MB - Last synced: 2 months ago - Pushed: over 2 years ago

dviraran/Parainflammation
  • * DESCRIPTION

Size: 17.4 MB - Last synced: 11 months ago - Pushed: over 5 years ago

bug1303/Scillus Fork of xmc811/Scillus
R Package for Single-Cell Dataset Processing and Visualization
  • * DESCRIPTION

Size: 11.2 MB - Last synced: 11 months ago - Pushed: over 2 years ago

trintala/COPS_backup Fork of UEFBiomedicalInformaticsLab/COPS
Clustering algorithms for Omics-driven Patient Stratification
  • * DESCRIPTION

Size: 6.35 MB - Last synced: 11 months ago - Pushed: over 1 year ago

phoebee-h/SingleR Fork of dviraran/SingleR
SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  • * DESCRIPTION

Size: 893 MB - Last synced: 10 months ago - Pushed: almost 5 years ago

royfrancis/cerebroApp Fork of romanhaa/cerebroApp
R package containing the Cerebro application.
  • >= 1.30.0 DESCRIPTION

Size: 22.4 MB - Last synced: 10 months ago - Pushed: over 2 years ago

royfrancis/Cerebro Fork of romanhaa/Cerebro
Visualization of scRNA-seq data.
  • >= 1.30.0 source/Windows/R-Portable-Win/library/cerebroApp/DESCRIPTION

Size: 2.99 GB - Last synced: 10 months ago - Pushed: over 1 year ago

mdmkac1/SingleR Fork of dviraran/SingleR
SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  • * DESCRIPTION

Size: 893 MB - Last synced: 10 months ago - Pushed: almost 4 years ago

gnvalbuena/ISCindex
An R package to calculate an intestinal stem cell index from gene expression profiling data
  • * DESCRIPTION

Size: 51.8 KB - Last synced: 10 months ago - Pushed: 10 months ago

monovich/xCell Fork of dviraran/xCell
Cell types enrichment analysis
  • * DESCRIPTION

Size: 18.3 MB - Last synced: 10 months ago - Pushed: almost 5 years ago