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GitHub / npervaiz / singleCellTK
Interactively Analyze scRNA-Seq Data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/npervaiz%2FsingleCellTK
Fork of compbiomed/singleCellTK
Stars: 0
Forks: 0
Open Issues: 0
License: other
Language: R
Repo Size: 677 MB
Dependencies:
115
Created: almost 3 years ago
Updated: about 1 year ago
Last pushed: 5 months ago
Last synced: 5 months ago
Files
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Readme
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Dependencies
- actions/checkout v2 composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite
- r-lib/actions/setup-r-dependencies v1 composite
- BSFishy/pip-action v1 composite
- actions/checkout v2 composite
- actions/setup-python v2.2.2 composite
- actions/upload-artifact main composite
- codecov/codecov-action v2.1.0 composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite
- r-lib/actions/setup-r-dependencies v1 composite
DESCRIPTION
cran
- Biobase * depends
- DelayedArray * depends
- R >= 4.0 depends
- SingleCellExperiment * depends
- SummarizedExperiment * depends
- AnnotationHub * imports
- BiocParallel * imports
- ComplexHeatmap * imports
- DESeq2 * imports
- DT * imports
- DelayedMatrixStats * imports
- DropletUtils * imports
- ExperimentHub * imports
- GSEABase * imports
- GSVA >= 1.26.0 imports
- GSVAdata * imports
- KernSmooth * imports
- MAST * imports
- Matrix * imports
- R.utils * imports
- ROCR * imports
- Rtsne * imports
- S4Vectors * imports
- Seurat >= 3.1.3 imports
- SingleR * imports
- SoupX * imports
- TENxPBMCData * imports
- TSCAN * imports
- TrajectoryUtils * imports
- VAM >= 0.5.3 imports
- ape * imports
- batchelor * imports
- celda * imports
- celldex * imports
- circlize * imports
- cluster * imports
- colorspace * imports
- colourpicker * imports
- cowplot * imports
- data.table * imports
- dplyr * imports
- enrichR * imports
- ensembldb * imports
- fields * imports
- fishpond * imports
- ggplot2 * imports
- ggplotify * imports
- ggrepel * imports
- ggtree * imports
- gridExtra * imports
- igraph * imports
- limma * imports
- magrittr * imports
- matrixStats * imports
- metap * imports
- methods * imports
- msigdbr * imports
- multtest * imports
- plotly * imports
- plyr * imports
- reshape2 * imports
- reticulate >= 1.14 imports
- rlang * imports
- rmarkdown * imports
- scDblFinder * imports
- scMerge >= 1.2.0 imports
- scRNAseq >= 2.0.2 imports
- scater * imports
- scds >= 1.2.0 imports
- scran * imports
- scuttle * imports
- shiny * imports
- shinyalert * imports
- shinycssloaders * imports
- shinyjs * imports
- stats * imports
- sva * imports
- tibble * imports
- tools * imports
- tximport * imports
- utils * imports
- withr * imports
- yaml * imports
- zinbwave * imports
- BiocGenerics * suggests
- BiocStyle * suggests
- RColorBrewer * suggests
- Rsubread * suggests
- fastmap >= 1.1.0 suggests
- harmony * suggests
- kableExtra * suggests
- knitr * suggests
- lintr * suggests
- org.Mm.eg.db * suggests
- shinyBS * suggests
- shinyFiles * suggests
- shinyWidgets * suggests
- shinyjqui * suggests
- shinythemes * suggests
- spelling * suggests
- stringr * suggests
- testthat * suggests
Dockerfile
docker
- rocker/shiny-verse 4.0.3 build