genepattern/Seurat.IntegrateData

GenePattern module which implements the batch correction algorithm within Seurat.

Language: R - Size: 431 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

bixBeta/scRNA-WS24

Exercises for scRNA-seq Workshop TREX x BioHPC 2024.

Language: Jupyter Notebook - Size: 11.7 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 2

JGASmits/AnanseSeurat

Single cell ANANSE Gene-regulatory-network analysis from Seurat objects

Language: R - Size: 620 KB - Last synced: 18 days ago - Pushed: 7 months ago - Stars: 8 - Forks: 2

zhanghao-njmu/SCP

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

Language: R - Size: 788 MB - Last synced: 3 months ago - Pushed: 4 months ago - Stars: 284 - Forks: 54

OlivierRaineteauSBRI/scRNASeq

Repo linked to our recent publication in Science Advances

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Dragonmasterx87/Interactive-3D-Plotting-in-Seurat-3.0.0

This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data

Language: R - Size: 68.4 KB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 104 - Forks: 27

Kur1sutaru/wrapper_factory

Language: Shell - Size: 3.91 KB - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 0 - Forks: 0

fmbetul/datacleaning

R toolkit designed to enhance the process of cleaning up and visualizing clusters within a Seurat object, commonly used for scRNA-seq data analysis.

Language: R - Size: 14 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

fmbetul/bioinfotools

R package providing essential bioinformatics tools for the analysis and visualization of scRNA-seq data.

Language: R - Size: 19.5 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

kullrich/scTEI

add any phylogenetically based transcriptome evolutionary index (TEI) to single-cell data objects

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kpatel427/multiome_analysis

Scripts for sincle cell multiome analysis

Language: R - Size: 37.1 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 7 - Forks: 1

kreindata/simple-seurat

Simplifying Seurat data processing, clustering, and analysis

Language: R - Size: 27.3 KB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

ngshasan/scRNA-marker-gene-Annotation

scRNA-marker-gene-Annotation.

Language: R - Size: 12.7 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 1

dmalzl/yoRISC

A bit of code to interconvert objects between the Seurat and RISC environments for scRNA-seq data analysis

Language: R - Size: 13.7 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0