GitHub topics: orthofinder
kullrich/scTEI
scTEI - add any phylogenetically based transcriptome evolutionary index (TEI) to single-cell data objects
Language: HTML - Size: 58 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 2 - Forks: 0
lydia-holley/Wyeomyia-smithii-project
Scripts I wrote as a graduate research assistant while working on the Wyeomyia smithii Genome project for Dr. Elizabeth Cooper's Lab at UNC Charlotte
Language: Python - Size: 7.81 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
kullrich/orthomap 📦
orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.
Language: Python - Size: 59.1 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 1
jlanga/docker-orthofinder Fork of cmonjeau/docker-orthofinder
Dockerfile for OrthoFinder tool
Size: 4.88 KB - Last synced at: almost 2 years ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 1
mchunn-1/R_code
Repository containing code I have written in R.
Size: 502 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
PlantDr430/BuscoOrthoPhylo
Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
Language: Python - Size: 43.9 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 15 - Forks: 4
