Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: deseq2-analysis

Repositories

rohan-b-84/dge_analysis_using_DESeq2

Differential Gene Expression analysis in R using DESeq2

Language: HTML - Size: 2.53 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 0 - Forks: 0

michalbukowski/dge-ontology

Jupyter notebooks for DGE results and ontology analysis and visualisation.

Language: Jupyter Notebook - Size: 1.09 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

meeranhussain/RNASeq_Deseq2_Snakemake

Differential gene expression analysis for samples with replicates using STAR-DeSeq2 pipeline

Language: R - Size: 44.9 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

scheuermann-daniel/RNASeq_Analysis_Pasilla

DESeq2 Analysis and visualization of specific genes, notably Pasilla. Script aims to identify and filters differentially expressed genes and neatly store the results. The project also includes Gene Ontology (GO) and Kegg pathway analyses, providing insights into the biological processes affected by the Pasilla gene depletion.

Size: 1.22 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

eriklarsen4/RNAseq

Template R code for bioinformatics analysis pipeline of transcriptomic Illumina datasets

Language: HTML - Size: 14 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

Moha-cm/RNAseq-Analysis

Bulk Rna-seq Analysis

Language: HTML - Size: 4.4 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

tacazares/SeedMatchR

Off-target analysis of siRNA knock down paired with RNAseq

Language: R - Size: 10.2 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 2 - Forks: 0

Tec-BASE-Laboratory/DGE-Analysis

Differential Gene Expression (DGE) Analysis with DESeq2 using a reference genome

Language: R - Size: 11.7 KB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

sivkri/miRNASeq-DE-Analysis-QC

Performing RNA-Seq data analysis and quality control using DESeq2 in R.

Language: R - Size: 110 KB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

mchunn-1/R_code

Repository containing code I have written in R.

Size: 502 KB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

foreverstas/DGE_workshop_rus

https://foreverstas.github.io/DGE_workshop_rus/

Language: HTML - Size: 35.2 MB - Last synced: 10 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

peterlipan/DE_rpy2

Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2

Language: Jupyter Notebook - Size: 115 KB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 10 - Forks: 0

pblumenkamp/GenExVis

An application for exploring and visualizing differential gene expression data created with DESeq2

Language: Vue - Size: 32.3 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 8 - Forks: 0

francescopatane96/RNA-seq_Pipeline

Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...

Language: Jupyter Notebook - Size: 31.3 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0