ngless-toolkit/ngless

NGLess: NGS with less work

Language: Haskell - Size: 14.2 MB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 143 - Forks: 25

OrangePomeranian/Genomic_Analysis_Pipeline_with_Snakemake

Genomic Analysis Pipeline: Automate data preprocessing, variant calling, and annotation with Snakemake. Ensure reproducibility and reliability in genomic studies.

Language: HTML - Size: 1.08 MB - Last synced: 21 days ago - Pushed: 22 days ago - Stars: 0 - Forks: 0

divonlan/genozip

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

Language: C - Size: 966 MB - Last synced: 16 days ago - Pushed: about 1 month ago - Stars: 149 - Forks: 10

plmilord/Hass.io-custom-component-spaclient Fork of jmoor3/homeassistant-components

Home Assistant integration - Spa Client

Language: Python - Size: 618 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 47 - Forks: 15

4dn-dcic/docker-4dn-hic

Docker for 4DN Hi-C processing pipeline

Language: Common Workflow Language - Size: 527 MB - Last synced: 18 days ago - Pushed: 18 days ago - Stars: 55 - Forks: 17

yenon118/snakyVC

The snakyVC pipeline is designed for efficiently and parallelly executing variant calling on next-generation sequencing (NGS) whole-genome datasets.

Language: Python - Size: 847 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

nuhptr/laravel-code

Language: PHP - Size: 8.09 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

jonathanBieler/BurrowsWheelerAligner.jl

Binding for bwa

Language: Julia - Size: 156 KB - Last synced: 21 days ago - Pushed: about 2 months ago - Stars: 8 - Forks: 0

TRON-Bioinformatics/tronflow-alignment

Nextflow pipeline for BWA, BWA2 and STAR alignments

Language: Nextflow - Size: 22.7 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 8 - Forks: 2

IARCbioinfo/alignment-nf

Whole Exome/Whole Genome Sequencing alignment pipeline

Language: Nextflow - Size: 3.72 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 25 - Forks: 12

Moha-cm/RNAseq-Analysis

Bulk Rna-seq Analysis

Language: HTML - Size: 4.4 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

SushiLab/mVIRs

Language: Python - Size: 21.8 MB - Last synced: 24 days ago - Pushed: 3 months ago - Stars: 12 - Forks: 3

wucc009/Platelet_transcriptome_fastq_data_processing

血小板转录组fastq数据处理

Language: Shell - Size: 22.5 KB - Last synced: 4 months ago - Pushed: 12 months ago - Stars: 2 - Forks: 0

StevenWingett/FastQ-Screen

Detecting contamination in NGS data and multi-species analysis

Language: HTML - Size: 1.87 MB - Last synced: 7 months ago - Pushed: 9 months ago - Stars: 48 - Forks: 13

DKFZ-ODCF/AlignmentAndQCWorkflows

The DKFZ alignment workflow plugin originally developed at the eilslabs

Language: Python - Size: 5.22 MB - Last synced: 7 months ago - Pushed: 8 months ago - Stars: 5 - Forks: 5

modupeore/VAP

VAP : For Reference mapping and Variant detection.

Language: Perl - Size: 21.5 KB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 4

gustaveroussy/wes-snp-bwa-mutect2-annovar

Reference pipeline for somatic SNP detection using BWA for mapping, Mutect2 for calling and Annovar for annotation

Size: 14.6 KB - Last synced: 7 months ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0

broadinstitute/gatk-bwamem-jni

JNI code for bwa mem

Language: Java - Size: 129 KB - Last synced: 7 months ago - Pushed: almost 5 years ago - Stars: 3 - Forks: 3

LidiaGS/g-d_algorithm

Language: Python - Size: 47.9 KB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 1

tdayris-perso/wes-mapping-bwa-gatk 📦

Map and post-process your bams for SNP calling

Language: Python - Size: 221 KB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 2 - Forks: 1

RRafiee/GenomeAnalysisToolkit

Genome Analysis Toolkit

Language: R - Size: 45.9 KB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

hewillk/aligner

Highly optimized Burrow-Wheeler Aligner specifically for Illumina ~150 bp short-read alignment.

Language: C++ - Size: 547 KB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

AndyNotfound/Luxspace

Tech Stack: React, and Tailwind CSS

Language: JavaScript - Size: 3.77 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

firmann19/bwa-storegg-server

Server-Side BWA MERN 2021

Language: EJS - Size: 2.03 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

nuno-agostinho/bwa-docker

Docker to run BWA for aligning sequences against a reference genome

Size: 0 Bytes - Last synced: 10 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

villegar/w2rap-docker

Docker container for W2RAP based on CentOS

Language: Dockerfile - Size: 2.93 KB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

abs-tudelft/variant-calling-at-scale

Scalable and High Performance Variant Calling on Cluster Environments

Language: Python - Size: 818 KB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 10 - Forks: 0

crisprVerse/crisprBwa

BWA-based alignment of CRISPR gRNA spacer sequences

Language: R - Size: 105 KB - Last synced: 4 days ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

oskarvid/Selma

Germline Variant Calling Pipeline built in Snakemake

Language: Shell - Size: 7.89 MB - Last synced: 12 months ago - Pushed: about 1 year ago - Stars: 3 - Forks: 3

databricks/genomics-pipelines

secondary analysis pipelines parallelized with apache spark

Language: Scala - Size: 14 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 10 - Forks: 6

mattgalbraith/bwa-docker-singularity

Build Docker container for BWA and (optionally) convert to Apptainer/Singularity.

Language: Dockerfile - Size: 1.95 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

rifkiramadhan/bwa-storegg-server

Ini adalah project Server-Side dari kelas BWA MERN 2021

Language: EJS - Size: 2.19 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 7 - Forks: 0

nicolo-tellini/S.cerevisiaeData

1,674 S.cerevisiae genomics data

Language: Shell - Size: 4.12 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

Sydney-Informatics-Hub/IndexReferenceFasta-nf

Create required reference genome index files for WGS data analysis

Language: Nextflow - Size: 71.3 KB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

paalka/SparkAligner 📦

A modular version of SparkBWA

Language: Java - Size: 2.43 MB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 2

npanuhin/BIOCAD-BWA 📦

The second part of https://github.com/npanuhin/BIOCAD

Language: Python - Size: 244 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

apeltzer/BWA-Mismatches

Language: R - Size: 1.95 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 3 - Forks: 0

rifkiramadhan/bwa-storegg-client

Ini adalah project Client-Side dari kelas BWA MERN 2021

Language: TypeScript - Size: 2.26 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 4 - Forks: 0

monfadev/flutix

Ticketing on this app for watch movie

Language: Dart - Size: 579 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

monfadev/shamo

Shoes Store App

Language: Dart - Size: 5.81 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

mnievesc/Ancient_mtDNA_Pipeline

Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.

Language: Shell - Size: 155 KB - Last synced: 7 months ago - Pushed: about 4 years ago - Stars: 7 - Forks: 3

armandwipangestu/laracamp

BWA Class

Language: PHP - Size: 72.3 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

AntoineHo/runGATK

Small GATK alignment and variant calling pipeline using python

Language: Python - Size: 91.8 KB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 0

colbyford/msgen

msgen: R functions for interfacing with the Microsoft Genomics service on Azure.

Language: R - Size: 1.19 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 2 - Forks: 0

crisprVerse/Rbwa

R wrapper for BWA-backtrack and BWA-MEM aligners

Language: C - Size: 313 KB - Last synced: 16 days ago - Pushed: 11 months ago - Stars: 0 - Forks: 1

kalilamali/FishDNA_pipeline

Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.

Size: 10.6 MB - Last synced: 26 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

MDCIII/1603_16_72

1603:16:72 🇧🇼

Size: 0 Bytes - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

hisplan/docker-bwa

Dockerized BWA (Burrow-Wheeler Aligner for short-read alignment)

Language: Shell - Size: 2.93 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

jianhong/genomictools

docker file for genomic tools

Language: Dockerfile - Size: 176 MB - Last synced: 16 days ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

Syahro/cozy

This app abaut finding a homestay and I use for practice code.

Language: Dart - Size: 12.5 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

Syahro/game_stream_app

a design apps for play streaming game,

Language: Dart - Size: 12.7 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 1

fajar7xx/android-movie-ticket-booking

this is just impelementation from movie ticketing like cinema21, just simple and buat pusing. hahahah.

Language: Kotlin - Size: 2.28 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 2 - Forks: 0

renatopuga/exoma-de-rato

Variantes genéticas de amostras de Rattus norvegicus utilizando GATK4

Language: HTML - Size: 4.02 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

celalp/parse_pileup

Parse pileup files, generate consensus fasta and calculate heteroplasmy per nucleotide

Language: Python - Size: 27.3 KB - Last synced: 11 months ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0

luispedro/split-align

Language: Python - Size: 2.93 KB - Last synced: 7 months ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0