Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: reference-genome
EmilieT/mutcraft
R tools to mine & craft somatic mutations from cancer genomes
Language: R - Size: 443 KB - Last synced: about 1 month ago - Pushed: about 7 years ago - Stars: 3 - Forks: 2
Hoohm/dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
Language: Python - Size: 6.74 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 146 - Forks: 45
superphy/prairiedog_go
probability emitting pangenome graphs
Language: Go - Size: 7.71 MB - Last synced: about 2 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0
refgenie/refgenie
Reference genome resource manager
Language: Python - Size: 935 KB - Last synced: 2 days ago - Pushed: 6 months ago - Stars: 69 - Forks: 10
refgenie/refgenieserver
Serves a web interface and RESTful API for reference genome assets.
Language: Python - Size: 628 KB - Last synced: 5 months ago - Pushed: over 2 years ago - Stars: 12 - Forks: 3
grev-uv/hpg-methyl
An ultrafast and highly sensitive Next-Generation Sequencing (NGS) read mapper and methylation extractor.
Language: C - Size: 78.8 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 8 - Forks: 2
shumengjun/TASSEL_GBS_V2
Calling SNPs using TASSEL GBS V2 pipeline for ponderosa pine using the reference genome of loblolly pine
Language: Shell - Size: 51.8 KB - Last synced: 8 months ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0
Genomicsplc/variantkey
Numerical Encoding for Human Genetic Variants
Language: C - Size: 1.39 MB - Last synced: 6 months ago - Pushed: about 1 year ago - Stars: 34 - Forks: 6
Sydney-Informatics-Hub/IndexReferenceFasta-nf
Create required reference genome index files for WGS data analysis
Language: Nextflow - Size: 71.3 KB - Last synced: about 2 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0
standage/genhub 📦
Explore eukaryotic genome composition and organization with iLoci
Language: Python - Size: 2.75 MB - Last synced: 3 months ago - Pushed: almost 5 years ago - Stars: 6 - Forks: 3
leahkemp/guinea_pore_c
Analysis documentation for part of the reference genome assembly of the humble guinea pig. Oxford Nanopore Technologies (ONT) pore-c data.
Language: HTML - Size: 12 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
visheshsinha/DNA-Sequencing
Get Started with DNA Sequencing working with .FastQ and .FastA file formats and performing Pattern Matching Algorithms (Exact & Approximate).
Language: Jupyter Notebook - Size: 324 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 1
Nazeeefa/bioinfo_nf
Language: Python - Size: 5.86 MB - Last synced: over 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
refgenie/refgenconf
A Python object for standardized reference genome assets.
Language: Python - Size: 943 KB - Last synced: about 1 month ago - Pushed: 6 months ago - Stars: 3 - Forks: 6
AnimalGenomicsETH/Reference_assembly_choice
Repository including scripts and workflows for "Investigating the impact of reference assembly choice on genomic analyses in a cattle breed"
Language: Jupyter Notebook - Size: 149 KB - Last synced: over 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0
tseemann/polyfix
🔪⛓️ Repair nanopore assemblies using related genome(s)
Language: Perl - Size: 20.5 KB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 5 - Forks: 0
