GitHub topics: drop-seq
nunofonseca/fastq_utils
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
Language: C - Size: 82 MB - Last synced at: 6 months ago - Pushed at: 11 months ago - Stars: 34 - Forks: 15
Hoohm/dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
Language: Python - Size: 6.74 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 146 - Forks: 45
martinholub/DroNc-seq
Workflow for data analysis of DroNc-seq Data
Language: HTML - Size: 5.82 MB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 0
CTR-BFX/2018_Bacon_Charnock-Jones
Bacon, W.A., Hamilton, R.S., Yu, Z., Kieckbusch, J., Hawkes, D., Krzak, A., Abell, C., Colucci, F. & Charnock-Jones, D.S. (2018) Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice. Front. Immunol., 9:2523 https://doi.org/10.3389/fimmu.2018.02523
Language: R - Size: 24.3 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 5 - Forks: 3
JulianSpagnuolo/adtseq
adtseq provides simple Rcpp methods to identify Antibody-Derived-Tags in single cell CITE/REAP-seq data
Language: C++ - Size: 69.3 KB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 0
sirusb/2CLike_analysis
Some of the mapping and normalization scripts used in our NCB paper PMID:31209294
Language: Groovy - Size: 26.4 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 0
seb-mueller/simulate-rnaseq-reads
Simulating RNA-Seq reads from transcriptome to test software (e.g. for Drop-Seq singleCell software)
Language: Python - Size: 14.6 KB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 1
