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GitHub topics: umi-count

nunofonseca/fastq_utils

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

Language: C - Size: 82 MB - Last synced at: 6 months ago - Pushed at: 11 months ago - Stars: 34 - Forks: 15

berenslab/umi-normalization

Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology

Language: Jupyter Notebook - Size: 89.2 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 37 - Forks: 2

jessievb/IDseq

R-package to analyse data from the immuno-detection by sequencing (ID-seq) technology.

Language: R - Size: 14.6 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 4 - Forks: 0

Related Keywords
umi-count 3 fastq-files 2 umi 2 sequencing 2 10x 1 negative-binomial-model 1 negative-binomial-regression 1 normalization 1 scrna 1 single-cell-analysis 1 single-cell-rna-seq 1 t-sne 1 umi-count-matrix 1 antibody 1 barcode 1 dna 1 dna-sequences 1 r 1 rpackage 1 rstudio 1 umi-sequence 1 barcodes 1 dge 1 digital-gene-expression 1 drop-seq 1 fastq 1 fastq-filterpair 1 fastq-validation 1 high-throughput-sequencing 1 ngs 1 scrna-seq 1 single-cell 1 validation 1 dimensionality-reduction 1 gene-selection 1 glm-pca 1 negative-binomial 1