Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: scrna
j-andrews7/KnowledgeDump
Gotta keep the brain empty to learn more. This is my easily digestible backup.
Size: 3.53 MB - Last synced: 14 days ago - Pushed: 15 days ago - Stars: 1 - Forks: 0
rnabioco/scRNA-seq-Cell-Ref-Matrix
A reference matrix atlas of all single cell RNA-seq data on NCBI GEO for mice and humans
Language: R - Size: 338 MB - Last synced: about 1 month ago - Pushed: almost 4 years ago - Stars: 4 - Forks: 1
ylaboratory/seismic
Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
Language: R - Size: 45.1 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0
ForwardStar/sctreeshap
An effective tool for single-cell RNA sequencing.
Language: Python - Size: 418 MB - Last synced: 23 days ago - Pushed: about 2 months ago - Stars: 1 - Forks: 1
TomKellyGenetics/UniverSCAFE
Docker container for combining UniverSC and SCAFE for 5' RNA-Seq data
Language: Dockerfile - Size: 31.2 MB - Last synced: 3 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0
TomKellyGenetics/cellranger_clean Fork of mckinsel/cellranger_clean
10x Cell Ranger Docker Image
Language: Shell - Size: 42 KB - Last synced: 3 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 1
Charlene717/H5AD_PRJCA001063_PDAC
Creater: Charlene717
Language: R - Size: 183 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0
berenslab/umi-normalization
Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
Language: Jupyter Notebook - Size: 89.2 MB - Last synced: 29 days ago - Pushed: about 2 years ago - Stars: 37 - Forks: 2
klarman-cell-observatory/scPlot
Single cell interactive plotting tools
Language: Jupyter Notebook - Size: 37.9 MB - Last synced: 2 days ago - Pushed: about 4 years ago - Stars: 24 - Forks: 8
raevskymichail/epi-impute
Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data
Language: R - Size: 56.3 MB - Last synced: 8 months ago - Pushed: 11 months ago - Stars: 3 - Forks: 1
ucdavis-bioinformatics-training/2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
Language: HTML - Size: 90 MB - Last synced: over 1 year ago - Pushed: almost 6 years ago - Stars: 33 - Forks: 13
raveancic/scRNAaltas_TNBC_mm
Language: Python - Size: 22.5 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1
bixBeta/TReX
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @Cornell-Trex
Language: Shell - Size: 1.06 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 4 - Forks: 1
ngshasan/single-cell-RNA-Seq-Data-Analysis-Methods
single-cell-RNA-Seq-Data-Analysis-Methods
Size: 3.91 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0
ethan-mccarthy/scrnahelper
I've written a few functions that help me look through scRNA-seq data while working with Seurat.
Language: R - Size: 11.7 KB - Last synced: over 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0
ucdavis-bioinformatics-training/So-you-want-to-do-a-Single-Cell-RNA-seq-experiment
So you want to do a: Single Cell RNA-seq experiment
Size: 15.3 MB - Last synced: over 1 year ago - Pushed: over 6 years ago - Stars: 2 - Forks: 4