cantinilab/Circe

Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).

Language: Python - Size: 16.5 MB - Last synced at: 1 day ago - Pushed at: 30 days ago - Stars: 21 - Forks: 1

ytanaka-bio/cisMultiDeep

Workflow to identify functional cis-regulatory regions for each annotated cell type

Language: Python - Size: 830 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

TomKellyGenetics/UniverSCAFE

Docker container for combining UniverSC and SCAFE for 5' RNA-Seq data

Language: Dockerfile - Size: 31.2 MB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

jtwrt/VARIANT_VISUALIZER

Language: Jupyter Notebook - Size: 16.7 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

NAMlab/DeepCRE

Deep learning the cis-regulatory code for gene expression in selected model plants

Language: R - Size: 179 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

PelFritz/DeepCRE

This project contains code used in my work on predicting gene expression from cis-regulatory sequences

Language: R - Size: 158 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

pughlab/BCa_ATACSEQ_Project

This repository contains custom code used for analysis in El Ghamrasni et al.,

Language: R - Size: 54.7 KB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 1

santiago1234/MZT-rna-stability

Crosstalk between codon optimality and 3' UTR cis-elements dictates mRNA stability

Language: Jupyter Notebook - Size: 127 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 0