GitHub topics: binding-sites

Repositories

rdk/p2rank

P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.

Language: Groovy - Size: 675 MB - Last synced at: 13 days ago - Pushed at: 30 days ago - Stars: 304 - Forks: 37

KrumkachevaLab/EPR-BindingSite

Identification of Protein-Ligand Binding Sites using dipolar EPR data

Language: Jupyter Notebook - Size: 5.56 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 1 - Forks: 0

ZarnackGroup/BindingSiteFinder

Package for the definition of biniding sites for iCLIP data

Language: R - Size: 9.84 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 6 - Forks: 1

chaolinzhanglab/PlotPWM.jl

Plot position weight matrices (PWM)

Language: Julia - Size: 860 KB - Last synced at: 22 minutes ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

compcore-irzbz/bindseek

miRNA target identification in non-model species

Language: Python - Size: 228 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 1

salilab/cryptosite

Library for prediction of cryptic binding sites

Language: Python - Size: 17.4 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 20 - Forks: 5

Rostlab/bindPredict

Prediction of binding residues for metal ions, nucleic acids, and small molecules.

Language: Python - Size: 121 MB - Last synced at: 1 day ago - Pushed at: 4 months ago - Stars: 32 - Forks: 9

sb-ncbr/RBP-Tar

RBP-Tar is a web server for the retrieval of experimentally derived binding sites for hundreds of RNA Binding Proteins on the human genome.

Language: HTML - Size: 35.2 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 1

wlsong/PyLipID

A python toolkit for analysing membrane protein-lipid interactions.

Language: Python - Size: 132 MB - Last synced at: 5 months ago - Pushed at: about 2 years ago - Stars: 60 - Forks: 29

kchu25/SeqLogo.jl

Plot position weight matrices (PWM)

Language: Julia - Size: 276 KB - Last synced at: 22 minutes ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

mackerell-lab/FDA-compounds-SILCS-Hotspots-SI

SI data repository for the SILCS-Hotspots / druggable sites paper

Size: 2.26 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

benoukraflab/forkedTF Fork of Matthew-Dyer792/forkedTF-dev

ForkedTF is an R-library that introduces Forked-PMW (FPMW) and Forked-Sequence Logos (F-Logos) to provide a more comprehensive depiction of the sequence affinity of a Transcription factor (TF) of interest, including its DNA sequence and DNA methylation level, along with a segregated list of partner TFs.

Language: R - Size: 17.6 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0

jahnl/binding_in_disorder

Prediction of Binding Residues in Disordered Regions Based on Protein Embeddings; TUM Master Praktikum Bioinformatics 2022 (Project #3) and Master's Thesis

Language: Python - Size: 3.26 GB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 4 - Forks: 2

salilab/cryptosite-web

Web server for prediction of cryptic binding sites

Language: Python - Size: 92.8 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

akshayparopkari/discover_tfbs

Discover transcription factor (TF) binding specificities/sites (TFBS) using binding site motif sequence and structural information.

Language: Python - Size: 177 KB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

RBLeon/Auto-DNS-SSL-and-Binding

A proof of concept for my internship. Enter your business name and automatically generate an subdomain for this client, get a SSL certificate and create a http and https binding in IIS

Language: C# - Size: 868 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0