GitHub topics: splice-junctions
lcscs12345/riboss
Comparing translation of open reading frames within individual transcripts
Language: Python - Size: 262 MB - Last synced at: 8 days ago - Pushed at: 9 days ago - Stars: 0 - Forks: 1
biofcallejas/pysplicing
Splicing assembly for non-model organisms using RNAseq data
Language: Python - Size: 43 KB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 0 - Forks: 0
borgessbarbara/TranscriptClean-NF
An implementation of TranscriptClean tool into a Nextflow module
Size: 0 Bytes - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
Kuanhao-Chao/splam
✂️ Deep learning-based splice site predictor that improves spliced alignments
Language: C++ - Size: 1.22 GB - Last synced at: about 2 months ago - Pushed at: 2 months ago - Stars: 47 - Forks: 2
benniatli/Spliceformer
45k context transformer for splice site prediction implemented with PyTorch. The code will be added soon.
Language: Jupyter Notebook - Size: 137 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 2 - Forks: 0
SoniaRuiz/splicing-accuracy-manuscript
Code for the manuscript "Splicing accuracy varies across human introns, tissues and age".
Language: R - Size: 1.7 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
EI-CoreBioinformatics/portcullis
Splice junction analysis and filtering from BAM files
Language: C++ - Size: 62.8 MB - Last synced at: 11 months ago - Pushed at: about 3 years ago - Stars: 35 - Forks: 9
dieterich-lab/primex
Language: R - Size: 820 KB - Last synced at: about 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0
nalaekaw/exon_intron
Deep neural network for splice sites prediction
Language: Jupyter Notebook - Size: 56.1 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 2
guigolab/ipsa-nf
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
Language: Perl - Size: 9.87 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 7 - Forks: 5
mozack/abra2
ABRA2
Language: Java - Size: 8.26 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 86 - Forks: 10
dpatrinos/PrimerDesigner
A tool to create sequences for primers targeting exon-exon splice junctions
Language: Python - Size: 697 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
sivkri/RNASeq-Analysis-JunctionSeq-QoRTs
This repository provides scripts for RNA-Seq data analysis using JunctionSeq and QoRTs, enabling quality control, differential splicing analysis, and generation of browser tracks.
Language: R - Size: 14.6 KB - Last synced at: about 1 month ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
jnoms/SV40_transcriptome
Toolkit and pipeline for processing short- and long-read RNA sequencing data.
Language: Jupyter Notebook - Size: 4.36 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
Moeinh77/DNA-sequene-classificaiton
Classification of Splice Junction sites using Neural Networks with Python and Keras
Language: Jupyter Notebook - Size: 503 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
