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GitHub / Kuanhao-Chao / splam
✂️ Deep learning-based splice site predictor that improves spliced alignments
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Kuanhao-Chao%2Fsplam
Stars: 28
Forks: 1
Open Issues: 0
License: None
Language: C++
Repo Size: 1.22 GB
Dependencies:
4
Created: over 1 year ago
Updated: 26 days ago
Last pushed: 26 days ago
Last synced: 26 days ago
Commit Stats
Commits: 872
Authors: 4
Mean commits per author: 218.0
Development Distribution Score: 0.157
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/Kuanhao-Chao/splam
Topics: alignment, annotation, convolutional-neural-networks, deep-learning, residual-networks, rna-seq, splice-junctions, spliced-alignment, splicing, transcript-assembly
Files
Dependencies
- gffutils >=0.10.0
- progress >=1.0
- pybedtools >=0.9.0
- torch >=1.12.0