Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: splicing-analyses
gagneurlab/FRASER-old-gagneurlab Fork of gagneurlab/FRASER
Language: R - Size: 14.3 MB - Last synced: 4 days ago - Pushed: 20 days ago - Stars: 13 - Forks: 4
SoniaRuiz/introverse_v2
Second version of IntroVerse
Language: R - Size: 285 KB - Last synced: 12 days ago - Pushed: 12 days ago - Stars: 0 - Forks: 0
MatthiasLienhard/isotools
IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.
Language: Jupyter Notebook - Size: 38 MB - Last synced: 24 days ago - Pushed: 8 months ago - Stars: 19 - Forks: 5
SoniaRuiz/splicing-accuracy-manuscript
Code for the manuscript "Splicing accuracy varies across human introns, tissues and age".
Language: HTML - Size: 1.39 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0
VCCRI/Ularcirc
An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
Language: R - Size: 54.5 MB - Last synced: 2 months ago - Pushed: about 2 years ago - Stars: 15 - Forks: 7
guigolab/ipsa-nf
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
Language: Perl - Size: 9.87 MB - Last synced: 8 months ago - Pushed: almost 5 years ago - Stars: 7 - Forks: 5
vrmelo/SPLICE-q
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
Language: Python - Size: 314 KB - Last synced: 11 days ago - Pushed: 9 months ago - Stars: 8 - Forks: 2
BatistaLab/Exon9A_Nanopore
Nanopore direct RNA sequencing for cryptic splice mutation in HLRCC
Language: HTML - Size: 730 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0
matteocereda/RNAmotifs
RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences, referred to as multivalent RNA motifs, bound by RNA-binding proteins
Language: C++ - Size: 246 KB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 8 - Forks: 2
sivkri/splicing-events-calculation
Calculate five major splicing events using rMATS followed by annotation
Language: Jupyter Notebook - Size: 25.4 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
