MatthiasLienhard/isotools

IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.

Language: Jupyter Notebook - Size: 38 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 27 - Forks: 6

SoniaRuiz/splicing-accuracy-manuscript

Code for the manuscript "Splicing accuracy varies across human introns, tissues and age".

Language: R - Size: 1.7 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

vrmelo/SPLICE-q

SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.

Language: Python - Size: 314 KB - Last synced at: 21 days ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 3

TommasoTarchi/autoRNAseq

Automated pipeline for RNAseq data analysis using nextflow and singularity.

Language: Nextflow - Size: 206 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

SoniaRuiz/introverse_v2

IntroVerse 2.0 Update

Language: R - Size: 890 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

gagneurlab/FRASER-old-gagneurlab Fork of gagneurlab/FRASER

Language: R - Size: 14.3 MB - Last synced at: 11 months ago - Pushed at: 12 months ago - Stars: 13 - Forks: 4

VCCRI/Ularcirc

An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts

Language: R - Size: 54.5 MB - Last synced at: 17 days ago - Pushed at: about 3 years ago - Stars: 15 - Forks: 7

guigolab/ipsa-nf

Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow

Language: Perl - Size: 9.87 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 7 - Forks: 5

BatistaLab/Exon9A_Nanopore

Nanopore direct RNA sequencing for cryptic splice mutation in HLRCC

Language: HTML - Size: 730 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

matteocereda/RNAmotifs

RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences, referred to as multivalent RNA motifs, bound by RNA-binding proteins

Language: C++ - Size: 246 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 8 - Forks: 2

sivkri/splicing-events-calculation

Calculate five major splicing events using rMATS followed by annotation

Language: Jupyter Notebook - Size: 25.4 KB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0