Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub / VCCRI / Ularcirc
An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/VCCRI%2FUlarcirc
Stars: 15
Forks: 7
Open Issues: 7
License: gpl-3.0
Language: R
Repo Size: 54.5 MB
Dependencies:
35
Created: about 6 years ago
Updated: 7 months ago
Last pushed: about 2 years ago
Last synced: about 2 months ago
Topics: backsplicing, circrna, circular-rna, rna-seq, rna-seq-analysis, sequencing-rna, splicing-analyses, splicing-visualization
Files
Dependencies
- R >= 3.4.0 depends
- data.table * depends
- AnnotationDbi * imports
- AnnotationHub * imports
- BSgenome * imports
- BiocGenerics * imports
- Biostrings * imports
- DT * imports
- GenomeInfoDb * imports
- GenomeInfoDbData * imports
- GenomicAlignments * imports
- GenomicFeatures * imports
- GenomicRanges * imports
- Organism.dplyr * imports
- R.utils * imports
- S4Vectors * imports
- data.table >= 1.9.4 imports
- ggplot2 * imports
- ggrepel * imports
- gsubfn * imports
- mirbase.db * imports
- moments * imports
- plotgardener * imports
- shiny * imports
- shinyFiles * imports
- shinydashboard * imports
- shinyjs * imports
- yaml * imports
- BSgenome.Hsapiens.UCSC.hg38 * suggests
- BiocStyle * suggests
- TxDb.Hsapiens.UCSC.hg38.knownGene * suggests
- httpuv * suggests
- knitr * suggests
- org.Hs.eg.db * suggests
- rmarkdown * suggests