Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: cell-type-classification
nsalomonis/altanalyze
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
Language: Python - Size: 264 MB - Last synced: 17 days ago - Pushed: almost 2 years ago - Stars: 91 - Forks: 29
ZJUFanLab/scDeepSort
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
Language: Python - Size: 19.4 MB - Last synced: 4 days ago - Pushed: 11 months ago - Stars: 94 - Forks: 17
igordot/clustermole
Unbiased single-cell transcriptomic data cell type identification
Language: R - Size: 17.8 MB - Last synced: 29 days ago - Pushed: 30 days ago - Stars: 11 - Forks: 0
marvinquiet/Cellcano
Supervised cell type identification for scATAC-seq data
Language: Python - Size: 1.48 MB - Last synced: 1 day ago - Pushed: 10 months ago - Stars: 10 - Forks: 2
rezakj/iCellR
Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).
Language: R - Size: 68.2 MB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 117 - Forks: 19
Teichlab/celltypist
A tool for semi-automatic cell type classification
Language: Python - Size: 22 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 234 - Forks: 36
biomed-AI/SANGO
The official implementation for "SANGO".
Language: Jupyter Notebook - Size: 18.2 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 6 - Forks: 2
deweylab/CellO
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
Language: Jupyter Notebook - Size: 21.9 MB - Last synced: about 1 month ago - Pushed: 11 months ago - Stars: 60 - Forks: 11
CahanLab/CellNet
CellNet: network biology applied to stem cell engineering
Language: R - Size: 18.4 MB - Last synced: 3 months ago - Pushed: about 1 year ago - Stars: 50 - Forks: 28
CahanLab/PySingleCellNet
singleCellNet in Python
Language: Python - Size: 8.58 MB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 12 - Forks: 9
WangLab-SINH/BrainCellR
An R package for cell type nomenclature
Language: R - Size: 261 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0
CostaLab/CimpleG
CimpleG, an R package to find (small) CpG signatures.
Language: R - Size: 121 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 3 - Forks: 0
fungenomics/scCoAnnotate Fork of HusseinLakkis01/scCoAnnotate
Pipeline for consensus prediction of cell types in single-cell RNA sequencing data.
Language: R - Size: 740 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 2 - Forks: 0
LucasESBS/scoreCT
scoreCT: Automated Cell Type Annotation
Language: Jupyter Notebook - Size: 112 MB - Last synced: over 1 year ago - Pushed: about 2 years ago - Stars: 12 - Forks: 4
ACDBio/GCDPipe
A pipeline to predict risk genes, implicated cell types and drugs for repurposing based on known risk genes (derived from GWAS) for complex traits.
Language: Python - Size: 58.4 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0
ZJUFanLab/scDeepSort_performance_comparison
The source code and results for different methods on annotating external testing datsets of human and mouse.
Language: R - Size: 6.33 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 10 - Forks: 0
edmerix/UnitSubclassify
GUI for semi-automatic single neuron classification by cell type
Language: MATLAB - Size: 668 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0
ajitjohnson/IMAAP Fork of labsyspharm/IMAAP
Annotation and Analysis of Multiplexed Imaging Data
Language: R - Size: 495 KB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0
