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GitHub / CostaLab / CimpleG
CimpleG, an R package to find (small) CpG signatures.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CostaLab%2FCimpleG
Stars: 3
Forks: 0
Open Issues: 1
License: gpl-3.0
Language: R
Repo Size: 121 MB
Dependencies:
75
Created: over 3 years ago
Updated: 6 months ago
Last pushed: 6 months ago
Last synced: 6 months ago
Topics: biomarker-discovery, biomarkers, cell-type-classification, cpg-signature, deconvolution, methylation, r
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Dependencies
DESCRIPTION
cran
- R >= 4.0 depends
- OneR * imports
- PRROC * imports
- assertthat * imports
- butcher * imports
- caret * imports
- data.table * imports
- dplyr * imports
- grDevices * imports
- magrittr * imports
- matrixStats * imports
- methods * imports
- parsnip * imports
- purrr * imports
- recipes * imports
- rlang * imports
- rsample * imports
- scales * imports
- stats * imports
- tibble * imports
- tictoc * imports
- tidyr * imports
- tidyselect * imports
- tune * imports
- utils * imports
- workflows * imports
- yardstick * imports
- Biobase >= 2.54.0 suggests
- C50 * suggests
- ComplexHeatmap >= 2.10.0 suggests
- EpiDISH >= 2.10.0 suggests
- GEOquery * suggests
- NMF * suggests
- PMCMRplus * suggests
- RColorBrewer * suggests
- Rfast * suggests
- SummarizedExperiment >= 1.24.0 suggests
- archive * suggests
- biomaRt * suggests
- circlize * suggests
- devtools * suggests
- forcats * suggests
- furrr * suggests
- future * suggests
- future.apply * suggests
- ggExtra * suggests
- ggbeeswarm * suggests
- ggplot2 * suggests
- ggrepel * suggests
- ggsci * suggests
- ggsignif * suggests
- glmnet * suggests
- gtools * suggests
- knitr * suggests
- minfi >= 1.40.0 suggests
- mltools * suggests
- nnet * suggests
- nnls * suggests
- patchwork * suggests
- plyr * suggests
- ranger * suggests
- reshape2 * suggests
- rmarkdown * suggests
- spelling * suggests
- stringr * suggests
- testthat >= 3.0.0 suggests
- withr * suggests
- xgboost >= 1.3.2.1 suggests
- actions/checkout v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v1 composite
.github/workflows/pkgdown.yaml
actions
- actions/cache v2 composite
- actions/checkout v2 composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite