GitHub topics: diffusion-maps
dpeerlab/Palantir
Single cell trajectory detection
Language: Jupyter Notebook - Size: 56.2 MB - Last synced at: 10 days ago - Pushed at: about 1 month ago - Stars: 257 - Forks: 54
theislab/destiny
R package for single cell and other data analysis using diffusion maps
Language: R - Size: 20.9 MB - Last synced at: about 1 month ago - Pushed at: 8 months ago - Stars: 88 - Forks: 13
muscbridge/PyDesigner
A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k
Language: Python - Size: 47.8 MB - Last synced at: 14 days ago - Pushed at: 3 months ago - Stars: 29 - Forks: 7
sgh14/deep-diffusion-maps
A novel implementation of diffusion maps using deep learning (neural networks).
Language: Python - Size: 15.1 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
wildart/ManifoldLearning.jl
A Julia package for manifold learning and nonlinear dimensionality reduction
Language: Julia - Size: 3.5 MB - Last synced at: 5 days ago - Pushed at: over 1 year ago - Stars: 93 - Forks: 22
rezakj/iCellR
Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).
Language: R - Size: 68.2 MB - Last synced at: 14 days ago - Pushed at: about 1 year ago - Stars: 122 - Forks: 19
alan-turing-institute/ThermodynamicAnalyticsToolkit
Sampling-based approach to analyse neural networks using TensorFlow
Language: Python - Size: 13.7 MB - Last synced at: 27 days ago - Pushed at: over 6 years ago - Stars: 22 - Forks: 3
HaneWall/Manyfold.jl
Manifold Learning via Diffusion Maps in Julia
Language: Julia - Size: 1.01 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
sivadasetty/dMap_JAX
Diffusions maps using JAX
Language: Python - Size: 11.2 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
peterparity/conservation-laws-manifold-learning
Discovering Conservation Laws using Optimal Transport and Manifold Learning
Language: Jupyter Notebook - Size: 14 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 7 - Forks: 3
dimkastan/PyTorch-Spectral-clustering
[Under development]- Implementation of various methods for dimensionality reduction and spectral clustering implemented with Pytorch
Language: Python - Size: 820 KB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 158 - Forks: 14
ManuSetty/Palantir 📦
Single cell trajectory detection
Language: Jupyter Notebook - Size: 11.8 MB - Last synced at: almost 2 years ago - Pushed at: almost 7 years ago - Stars: 3 - Forks: 1
inespancorbo/Statistical-Computing
Mainly Non-Theory (Coding) Homework; Mainly Python
Language: Jupyter Notebook - Size: 23 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1
gmishne/InformedGeometry-CoupledPendulum Fork of oryair/InformedGeometry-CoupledPendulum
Language: Matlab - Size: 524 KB - Last synced at: almost 2 years ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 1
gmishne/pyquest Fork of hgfalling/pyquest
pyquest: diffusion analysis of transposable arrays
Language: Jupyter Notebook - Size: 16.3 MB - Last synced at: almost 2 years ago - Pushed at: almost 8 years ago - Stars: 5 - Forks: 3
gmishne/diffusion_maps
Matlab implementation of Diffusion Maps
Language: Matlab - Size: 5.86 KB - Last synced at: almost 2 years ago - Pushed at: almost 8 years ago - Stars: 8 - Forks: 1
YW81/diffusion_maps Fork of gmishne/diffusion_maps
Matlab implementation of Diffusion Maps
Language: MATLAB - Size: 5.86 KB - Last synced at: 17 days ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 0
bogdantoader/ManifoldLearningInPlatosCave
Numerical experiments showing artifacts resulting from dimensionality reduction.
Language: Jupyter Notebook - Size: 117 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
jwu4sml/Graph-Embedding-Techniques
It provides some typical graph embedding techniques based on task-free or task-specific intuitions.
Size: 104 KB - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 31 - Forks: 11
jmbr/diffusion-maps 📦
Fast computation of diffusion maps and geometric harmonics in Python. Moved to https://git.sr.ht/~jmbr/diffusion-maps
Language: Python - Size: 230 KB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 37 - Forks: 6
abt8601/diffusion-maps 📦
A library for diffusion maps (Numerical software development project)
Language: C++ - Size: 132 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 0
gmishne/DiffusionNet
Diffusion Net TensorFlow implementation
Language: Jupyter Notebook - Size: 2.07 MB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 10 - Forks: 4
sampolk/DiffusionLearning
This toolbox allows the implementation of the following diffusion-based clustering algorithms on synthetic and real datasets.
Language: MATLAB - Size: 5.56 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
rxlacroix/cisteRcians
Diffusion map of cistercian abbeys
Language: R - Size: 2.8 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
CompleteBlenderCreator/07.Game.Asset.Pack-Original
(GA_CBC) http://gdev.tv/cbcgithub
Size: 180 MB - Last synced at: over 2 years ago - Pushed at: about 7 years ago - Stars: 2 - Forks: 1
michellefli/cell-diff-reu-2018
Language: R - Size: 59.7 MB - Last synced at: over 1 year ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0
