connectomicslab/connectomemapper3

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

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MIC-DKFZ/MITK-Diffusion

MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

Language: C++ - Size: 15.9 MB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 70 - Forks: 15

carpentries-incubator/SDC-BIDS-dMRI

Introduction to dMRI

Language: Jupyter Notebook - Size: 41.5 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 20 - Forks: 16

muscbridge/PyDesigner

A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

Language: Python - Size: 47 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 20 - Forks: 6

brain-microstructure-exploration-tools/abcd-registration-experiments

experiments with diffusion image registration

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brain-microstructure-exploration-tools/abcd-noddi-tbss-experiments

experiments with neuroimaging pipelines that use noddi and tbss

Language: Python - Size: 144 KB - Last synced: 27 days ago - Pushed: 27 days ago - Stars: 1 - Forks: 0

lorifranke/FiberStars

Source code for FiberStars, a visualization tool for comparing dMRI data of multiple subjects.

Language: JavaScript - Size: 94 MB - Last synced: about 2 months ago - Pushed: 6 months ago - Stars: 5 - Forks: 1

Hyedryn/elikopy

ElikoPy is Python library aiming at easing the processing of diffusion imaging for microstructural analysis.

Language: Python - Size: 4.45 MB - Last synced: 29 days ago - Pushed: about 2 months ago - Stars: 3 - Forks: 4

treanus/KUL_NIS

KUL/UZ NeuroImaging Suite. A set of tools for brain and spine MRI analysis.

Language: Shell - Size: 742 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 15 - Forks: 11

dPys/PyNets

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

Language: Python - Size: 1010 MB - Last synced: 21 days ago - Pushed: 4 months ago - Stars: 117 - Forks: 41

christiennedamatac/tracula

Scripts related to "White Matter Microstructure in Attention-Deficit/Hyperactivity Disorder: A Systematic Tractography Study in 654 Individuals"

Language: Shell - Size: 12.7 KB - Last synced: 2 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

christiennedamatac/longitudinal_tract_based_spatial_statistics

Scripts related to "Associations between attention-deficit hyperactivity disorder (ADHD) symptom remission and white matter microstructure: A longitudinal analysis"

Language: Shell - Size: 6.84 KB - Last synced: 2 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

christiennedamatac/fixel_based_analysis

Scripts related to "Longitudinal changes of ADHD symptoms in association with white matter microstructure: A tract-specific fixel-based analysis"

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SlicerDMRI/slicerdmri.github.io

SlicerDMRI organization website repository

Language: JavaScript - Size: 427 MB - Last synced: 3 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 3

SlicerDMRI/whitematteranalysis

White matter tractography clustering and more...

Language: Python - Size: 203 MB - Last synced: 3 months ago - Pushed: 5 months ago - Stars: 60 - Forks: 30

SlicerDMRI/ORG-Atlases

ORG Fiber Clustering White Matter Atlas

Size: 1.46 MB - Last synced: 3 months ago - Pushed: 7 months ago - Stars: 23 - Forks: 6

oscarjalnefjord/ivim

An end-to-end python package for intravoxel incoherent motion (IVIM) analysis of diffusion MRI data

Language: Python - Size: 112 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

scil-vital/tractolearn

Tractography learning

Language: Python - Size: 576 KB - Last synced: 27 days ago - Pushed: 6 months ago - Stars: 5 - Forks: 4

KUL-Radneuron/KUL_FWT

Automated tractography using MRTrix3 CSD based on subject-specific parcellations from FreeSurfer and MultiScaleBrainParcellator

Language: Shell - Size: 366 MB - Last synced: 6 months ago - Pushed: 7 months ago - Stars: 2 - Forks: 4

SlicerDMRI/wmap

White Matter Analysis Pipeline (WMAP)

Language: Python - Size: 78.1 KB - Last synced: 3 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

TylerSpears/fenri

FENRI (Fiber Orientations from Explicit Neural Representations) Implementation Repository

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delucaal/MRIToolkit

Language: MATLAB - Size: 8.33 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 22 - Forks: 5

brightside51/dMRI_cGen

MSc Thesis on Conditional dMRI Generative AI Models and their applicability in the decreasing scan acquisition times and bettering of patient's quality of life.

Language: Jupyter Notebook - Size: 182 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

JonGant/DWIS

Diffusion Weighted Image Simulator

Language: Python - Size: 131 KB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

3Tissue/MRtrix3Tissue Fork of MRtrix3/mrtrix3

MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.

Language: C++ - Size: 24.3 MB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 8 - Forks: 5

micerr/Epilepsy-dMRI-VNS

Assessing microstructural brain differences in epileptic patients with vagus nerve stimulation via diffusion MRI, tractography and machine learning

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SlicerDMRI/tutorials

SlicerDMRI tutorial repository

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teanijarv/MAPMRI-pype

Python pipeline for analyzing diffusion MRI data using MAPMRI.

Language: Python - Size: 10.7 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

mdausort/TFE22-540

Codes of my master thesis

Language: Python - Size: 13.9 MB - Last synced: about 2 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 1

DelinteNicolas/TractAnalysis

Analysis of the structural connectivity of diffusion data

Language: Python - Size: 7.42 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

brainhack-school2023/subramani_Romy_project

This repository contains the code and documentation for the Brainhack School project on exploring the structure-function coupling and segregation analysis in video-watching electroencephalography (EEG) data. The project aims to investigate how the electrophysiological activity during video-watching is related to the underlying anatomical structure

Language: Python - Size: 1.6 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 1

multinetlab-amsterdam/data_preprocessing

This repo contains preprocessing scripts used in the lab, organized (mainly) by imaging modality.

Language: Jupyter Notebook - Size: 23.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

GewoonMaarten/spherical-dmri-conv

Sub-sampling on multi-dimensional diffusion MRI with rotation equivariance.

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la-boite/diffusion_ODF

Size: 14.6 KB - Last synced: over 1 year ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

drombas/streamlines-gsoc

Experiments related with streamlines carried out as part of GSoC 2021.

Language: Jupyter Notebook - Size: 12.9 MB - Last synced: over 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

renelabounek/sc-dmri-myelopathy

Folder containing all implemented or developed quantitative spinal cord imaging pipelines and data analyses

Language: MATLAB - Size: 1.03 MB - Last synced: over 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

Jinboasltw/jinbo_brain_book

Record all learned knowledge of MRI

Language: Python - Size: 4.88 KB - Last synced: 4 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

karanaggarwal1994/life-gpu-opt

LiFE-GPU-opt software is an optimized implementation of the compute-intensive matrix operations of the LiFE algorithm for GPUs.

Language: MATLAB - Size: 129 KB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0