GitHub topics: reference-free
ZJUFanLab/Subtypist
Subtypist is a computational toolkit for subtype identification of single-cell transcriptomic data without reference.
Language: R - Size: 11.1 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 0 - Forks: 0
aljpetri/isONform
De novo construction of isoforms from long-read data
Language: Python - Size: 771 KB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 28 - Forks: 3
gi-bielefeld/sans
Alignment-free phylogenomic splits
Language: C++ - Size: 9.33 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 6 - Forks: 2
aljpetri/isONclust3
De novo clustering of long transcript reads into genes
Language: Rust - Size: 9.76 MB - Last synced at: 19 days ago - Pushed at: about 2 months ago - Stars: 10 - Forks: 1
ZJUFanLab/scDeepSort
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
Language: Python - Size: 19.4 MB - Last synced at: about 10 hours ago - Pushed at: almost 2 years ago - Stars: 103 - Forks: 20
ZJUFanLab/scDeepSort_performance_comparison
The source code and results for different methods on annotating external testing datsets of human and mouse.
Language: R - Size: 6.33 MB - Last synced at: about 10 hours ago - Pushed at: about 4 years ago - Stars: 12 - Forks: 0
jfjlaros/HUMID
HUMID: reference free FastQ deduplication
Language: C++ - Size: 163 KB - Last synced at: 3 months ago - Pushed at: 7 months ago - Stars: 4 - Forks: 2
metagenopolis/ESKRIM
ESKRIM is a reference-free tool that compares microbial richness in shotgun metagenomic samples by counting k-mers
Language: Python - Size: 68.4 KB - Last synced at: 9 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 0
namini94/MUSTANG
MUSTANG: reference-free MUlti-sample Spatial Transcriptomics data ANalysis with cross-sample transcriptional similarity Guidance
Language: Python - Size: 3.36 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
tobiasrausch/rdxon
Reference-free FASTQ filter for rare germline and somatic variants
Language: C++ - Size: 89.8 KB - Last synced at: 2 months ago - Pushed at: almost 2 years ago - Stars: 5 - Forks: 0
edgardomortiz/sam2consensus
Get the consensus sequences from SAM (and BAM) files, ignoring the reference
Language: Python - Size: 63.5 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 8 - Forks: 3
paujedynak/reffree_cell_mix_tutorial
Example of an estimation of cell-type proportions using reference-free method (RefFreeEWAS)
Size: 1.62 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0
