sdtemple/isweep

Statistical inference of recent positive selection using IBD segments

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tskit-dev/msprime

Simulate genealogical trees and genomic sequence data using population genetic models

Language: Python - Size: 15.1 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 187 - Forks: 87

LohseLab/agemo

Laplace transformed coalescence time distributions

Language: Python - Size: 191 KB - Last synced at: 11 days ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 3

4ment/skyplotr

Language: R - Size: 714 KB - Last synced at: 2 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

statgenlmu/coala

A Framework for Coalescent Simulation in R

Language: R - Size: 1.12 MB - Last synced at: 20 days ago - Pushed at: about 1 year ago - Stars: 23 - Forks: 4

ytabatabaee/CASTLES

Coalescent-Aware Species Tree Length Estimation in Substitution-units

Language: Mathematica - Size: 628 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 4 - Forks: 1

ceglab/CoalQC

CoalQC:Quality assessment of genomic datasets for Coalescent inferences

Language: Shell - Size: 48.4 MB - Last synced at: 11 months ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 2

skleinbo/TreeProcesses.jl

binary tree generation algorithms

Language: Julia - Size: 22.5 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

PhyloStar/ie-phylo-exps

A repository that presents the results of Fossilized Birth-Death Trees for five datasets of Chang et al. (2015)

Language: Python - Size: 506 KB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 2 - Forks: 0

heavywatal/msutils

🌲 Utilities for coalescent simulation with ms

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eldonb/Durrett_Schweinsberg_Expected_SFS

C code for computing exact expected branch length spectrum of a Lambda-coalescent, in particular Example 2.4 in Durrett and Schweinsberg (2005)

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ammodramus/tsmc

triploid SMC inference method

Language: C - Size: 3.39 MB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1

armanbilge/APG

ancient population genomics

Language: Scala - Size: 180 KB - Last synced at: about 2 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0