GitHub topics: single-nucleotide-polymorphisms
CBIIT/nci-webtools-dceg-linkage
LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. Each included application is specialized for querying and displaying unique aspects of linkage disequilibrium.
Language: Python - Size: 38.9 MB - Last synced at: about 4 hours ago - Pushed at: about 5 hours ago - Stars: 24 - Forks: 12
connor122721/SharedPolymorphismsDaphnia
Evolutionary genomics of shared mutations within the Daphnia pulex species complex.
Language: R - Size: 207 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
ahmedmoustafa/genetic-ancestry
Genetic Ancestry
Language: Jupyter Notebook - Size: 13.9 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0
rdattafl/SNP-Data-Analysis-Project
A GitHub compiling the input data, Python and Jupyter Notebook scripts, and all relevant statistical outputs from running the AutoMLPipe-BC automated machine learning pipeline (from the Urbanowicz Lab - https://github.com/UrbsLab) on a large-scale single nucleotide polymorphism (SNP) dataset from patients with congenital heart disease (CHD)
Language: Jupyter Notebook - Size: 3.84 MB - Last synced at: 5 months ago - Pushed at: almost 4 years ago - Stars: 3 - Forks: 0
hrmazumder/Simulate_a_SNP_Pair
Simulation of a pair of Single Nucleotide Polymorphisms (SNPs) and associated binary response (e.g., disease status) based on real SNP data in R.
Language: R - Size: 112 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
NicholasDominic/The-NucleoNets
A novel deep polygenic neural network for predicting and identifying yield-associated SNPs in Indonesian rice accessions.
Language: Python - Size: 192 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
NicholasDominic/Stochastic-VIF-ID-Rice-SNPs
By leveraging ensemble learning, this program can be used to analyze the Linkage Disequilibrium between SNPs in each Indonesian rice chromosomes. Developed using Python 3.9.12.
Language: Jupyter Notebook - Size: 2.71 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
darlenewagner/SNP_Wrap_Python
Facilitates post-processing of SNP pipeline outputs
Language: Python - Size: 78.1 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
cejdan/sarc-predictions
Code repository for my master's thesis project
Language: R - Size: 245 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0
MH-Lee/gwas_data_preprocessing
SNP(VCF format) data preprocessing for GWAS disease prediction
Language: Python - Size: 20.5 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
tkmanabat/SARS-CoV-2-Clade-Identifier
SARS-CoV-2 Clade identifier with SNP data using machine learning.
Language: Jupyter Notebook - Size: 9.04 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
