GitHub topics: snp-data

Repositories

privefl/statgen-course

Statistical Human Genetics course using R

Language: TeX - Size: 3.63 MB - Last synced at: about 23 hours ago - Pushed at: about 24 hours ago - Stars: 2 - Forks: 0

privefl/bigsnpr

R package for the analysis of massive SNP arrays.

Language: R - Size: 107 MB - Last synced at: 1 day ago - Pushed at: 2 days ago - Stars: 208 - Forks: 46

EricArcher/strataG

strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

Language: HTML - Size: 26.2 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 26 - Forks: 12

YaoLab-Bioinfo/ECOGEMS

Efficient compression and retrieve of genotype data with integer sparse matrices

Language: R - Size: 553 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 16 - Forks: 1

rtahmasbi/GeneEvolve

A fast and memory efficient forward-time simulator of realistic whole-genome sequence and SNP data

Language: C++ - Size: 23.5 MB - Last synced at: 2 months ago - Pushed at: over 6 years ago - Stars: 7 - Forks: 4

codecreatede/pangenealign.jl

julia implementation for the analysis of pangenes

Language: Julia - Size: 3.91 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

JiscaH/sequoia

R package for pedigree inference based on SNP data

Language: Fortran - Size: 82.6 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 24 - Forks: 6

SNPware is a family of short bash scripts that allows to translate genotypes coded as GCTA or Illuimina Top Strand to AB coding using standard Illumina FinalReport files to create a library of genotype equivalences at each locus.

Language: Shell - Size: 34.2 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

igsr/igsr_analysis

This repo contains code that is relevant for the analysis (Mapping, BAM qc, Variant Calling, Filtering etc...) of IGSR data

Language: Jupyter Notebook - Size: 15.6 MB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 5

daormar/snptools

Package to work with single nucleotide polymorpishms (SNPs)

Language: M4 - Size: 1.98 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 0

SinomeM/QCtreeCNV

Powerful CNV calls filtering pipeline. Focused on fixed loci calling, before visual inspection.

Language: R - Size: 1.44 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

hrmazumder/Simulate_a_SNP_Pair

Simulation of a pair of Single Nucleotide Polymorphisms (SNPs) and associated binary response (e.g., disease status) based on real SNP data in R.

Language: R - Size: 112 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

solgenomics/SNPbinner

SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.

Language: Python - Size: 7.22 MB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 24 - Forks: 18

CNuge/miscellaneous_scripts

Various python programs I use for the manipulation of SNP genotype datasets and other bioinformatics tasks. This repository features miscellaneous scripts to help work efficiently in common bioinformatics tasks I encounter. Use at own risk

Language: Python - Size: 1.78 MB - Last synced at: almost 2 years ago - Pushed at: about 7 years ago - Stars: 1 - Forks: 0