Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: functional-genomics
TheJacksonLaboratory/geneweaver-api
A system for the integration and analysis of heterogeneous functional genomics data.
Language: Python - Size: 605 KB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 1 - Forks: 0
hanruizhang/zhanglab
Lab website
Language: HTML - Size: 39.1 MB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 0 - Forks: 0
TheJacksonLaboratory/geneweaver-db
The GeneWeaver database interaction code.
Language: Python - Size: 413 KB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 2 - Forks: 0
churchmanlab/genewalk
GeneWalk identifies relevant gene functions for a biological context using network representation learning
Language: Python - Size: 384 KB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 128 - Forks: 14
yupenghe/methylpy
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
Language: Python - Size: 28.5 MB - Last synced: 17 days ago - Pushed: about 1 year ago - Stars: 130 - Forks: 47
TheJacksonLaboratory/geneweaver-client
A client library for the integration and analysis of heterogeneous functional genomics data.
Language: Python - Size: 4.46 MB - Last synced: 28 days ago - Pushed: 28 days ago - Stars: 3 - Forks: 0
TheJacksonLaboratory/geneweaver-core
The core library for GeneWeaver projects.
Language: Python - Size: 364 KB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 2 - Forks: 0
IBM/omxware-getting-started
Examples to get started with IBM Functional Genomics Platform
Language: Jupyter Notebook - Size: 55.5 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 15 - Forks: 15
TheJacksonLaboratory/geneweaver-docs
Documentation site for the Geneweaver project.
Size: 1.53 MB - Last synced: about 2 months ago - Pushed: 2 months ago - Stars: 4 - Forks: 0
TheJacksonLaboratory/geneweaver-aon
Ortholog/homolog mapping for Geneweaver
Language: Python - Size: 16.5 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 1 - Forks: 0
tlnagy/Crispulator.jl
✂️ Pooled CRISPR screen optimization tool
Language: Jupyter Notebook - Size: 8.42 MB - Last synced: 28 days ago - Pushed: 5 months ago - Stars: 16 - Forks: 6
cailab-tamu/scTenifoldKnk
R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
Language: R - Size: 2.11 GB - Last synced: about 2 months ago - Pushed: almost 2 years ago - Stars: 33 - Forks: 5
gxelab/scripts
In-house scripts for data processing and analysis
Language: Python - Size: 149 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 2 - Forks: 1
fungenomics/HGG-oncohistones
Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)
Language: HTML - Size: 16.6 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 5 - Forks: 1
hqcasanova/arrayexpress-search
Responsive single-page search app for EMBL's Array Express archive. Written in Backbone + Marionette.
Language: JavaScript - Size: 905 KB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0
sivkri/Schizosaccharomyces-pombe-Chip-seq-analysis
After getting the bed file from the Peak calling, we can annotate and create all downstream analysis of two sets of data
Language: R - Size: 116 KB - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 0 - Forks: 0
m-jahn/TnSeq-pipe
TnSeq data processing workflow
Language: Perl - Size: 265 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 2 - Forks: 1
dzyim/awesome-regulatory-genomics-papers
A curated list of regulatory genomics papers and resources.
Size: 8.79 KB - Last synced: 15 days ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0
m-jahn/rebar Fork of Asplund-Samuelsson/rebar
Ralstonia eutropha BarSeq analysis
Language: Perl - Size: 146 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0
mragsac/PhD-Dissertation
Files used to generate Michelle Franc Ragsac's Ph.D. Dissertation
Language: TeX - Size: 34.5 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
almeidasilvaf/planttfhunter
An R package to identify plant transcription factors from protein sequence data and classify them in families
Language: R - Size: 4.27 MB - Last synced: 28 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
LRPatel1/SLIDER
SLIDER: Scoring Soriting Screens with Laplace and Differential Rank
Language: R - Size: 46.9 KB - Last synced: over 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0
qslin/Bulk-Segregation-Analysis
Developed by Qiaoshan Lin in Yaowu Yuan Lab
Language: Shell - Size: 20.5 KB - Last synced: over 1 year ago - Pushed: over 3 years ago - Stars: 2 - Forks: 2
m-jahn/CRISPRi-lib-pipe
Pipeline to process CRISPRi library sequencing data
Language: R - Size: 147 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 1 - Forks: 1
hessJ/FLEET
Functional LD-interval EnrichmEnt Test -- biological interpretation of GWAS signals
Language: R - Size: 568 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0
