GitHub topics: functional-genomics
mateomics/babesia_genomic_analysis
Proyecto de BioPython, Sem3, LCG. Análisis de genómica comparativa y funcional de *Babesia divergens*
Size: 2.96 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 0 - Forks: 0
nolan-h-hamilton/Consenrich
Genome-wide extraction of real-valued signals hidden in noisy multisample HTS data
Language: Python - Size: 300 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 6 - Forks: 1
churchmanlab/genewalk
GeneWalk identifies relevant gene functions for a biological context using network representation learning
Language: Python - Size: 391 KB - Last synced at: about 7 hours ago - Pushed at: about 1 year ago - Stars: 131 - Forks: 17
hanruizhang/zhanglab
Lab website
Language: HTML - Size: 45.5 MB - Last synced at: 18 days ago - Pushed at: 19 days ago - Stars: 0 - Forks: 0
snap-stanford/KGWAS
KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
Language: Python - Size: 26.1 MB - Last synced at: 7 days ago - Pushed at: 6 months ago - Stars: 73 - Forks: 8
almeidasilvaf/rplaza
An R interface to the PLAZA database for plant comparative genomics
Language: R - Size: 1.33 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
tlnagy/Crispulator.jl
✂️ Pooled CRISPR screen optimization tool
Language: Jupyter Notebook - Size: 8.42 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 20 - Forks: 6
yupenghe/methylpy
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
Language: Python - Size: 28.5 MB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 143 - Forks: 51
umutcakir/shiftscan
ShiftSCAN systematically detects chimeric and non-chimeric peptide sources by analyzing multi-frame translations in nucleotide sequences.
Language: Python - Size: 173 KB - Last synced at: 18 days ago - Pushed at: 3 months ago - Stars: 1 - Forks: 1
aaronkiggen/Daphnia-phd
My attempt at a docterate
Language: Shell - Size: 5.86 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
mragsac/PhD-Dissertation
Files used to generate Michelle Franc Ragsac's Ph.D. Dissertation
Language: TeX - Size: 52 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 3
m-jahn/TnSeq-pipe
TnSeq data processing workflow
Language: Perl - Size: 265 MB - Last synced at: 4 months ago - Pushed at: over 2 years ago - Stars: 7 - Forks: 2
ArcInstitute/ScreenPro2
Flexible analysis of high-content CRISPR screening
Language: Python - Size: 3.54 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 31 - Forks: 6
TheJacksonLaboratory/geneweaver-core
The core library for GeneWeaver projects.
Language: Python - Size: 430 KB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 2 - Forks: 0
TheJacksonLaboratory/geneweaver-api
A system for the integration and analysis of heterogeneous functional genomics data.
Language: Python - Size: 1.35 MB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 6 - Forks: 0
IBM/omxware-getting-started
Examples to get started with IBM Functional Genomics Platform
Language: Jupyter Notebook - Size: 55.5 MB - Last synced at: 3 months ago - Pushed at: 4 months ago - Stars: 15 - Forks: 15
almeidasilvaf/planttfhunter
An R package to identify plant transcription factors from protein sequence data and classify them in families
Language: R - Size: 4.27 MB - Last synced at: 17 days ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
khavarilab/arvid-home
ARVID home page
Language: R - Size: 1.59 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
cagintunc/single_cell_analysis
Functional Genomics Final Project - UC Berkeley
Language: Python - Size: 2.48 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
ndomah/Bioinformatics
Links to bioinformatics projects and learning materials.
Size: 2.93 KB - Last synced at: 5 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
imAlessas/bioinformatics-bachelor-thesis
Convolutional Neural Networks to study non coding variants in genomic sequences🧬[ITA]
Language: TeX - Size: 20.7 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
JuliusPinsker/bioconductor-learning-container
🧬 Containerized development environment for Harvard's Professional Certificate in Data Analysis for Genomics (PH525.x series). Streamlined setup for Bioconductor, R, and genomic data analysis with RStudio and DevContainer support.
Language: Dockerfile - Size: 9.77 KB - Last synced at: 6 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
TheJacksonLaboratory/geneweaver-docs
Documentation site for the Geneweaver project.
Size: 23.6 MB - Last synced at: 4 days ago - Pushed at: 8 months ago - Stars: 4 - Forks: 0
cailab-tamu/scTenifoldKnk
R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
Language: R - Size: 2.11 GB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 38 - Forks: 6
dzyim/awesome-regulatory-genomics-papers
A curated list of regulatory genomics papers and resources.
Size: 8.79 KB - Last synced at: 17 days ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
khavarilab/aemvars-home
AEMVARS
Language: R - Size: 199 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
TheJacksonLaboratory/geneweaver-client
A client library for the integration and analysis of heterogeneous functional genomics data.
Language: Python - Size: 4.74 MB - Last synced at: about 1 month ago - Pushed at: 9 months ago - Stars: 3 - Forks: 0
khavarilab/arvid-skin
ARVID-Skin
Language: R - Size: 439 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
gxelab/scripts
In-house scripts for data processing and analysis
Language: Python - Size: 149 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0
TheJacksonLaboratory/geneweaver-db
The GeneWeaver database interaction code.
Language: Python - Size: 591 KB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0
fungenomics/HGG-oncohistones
Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)
Language: HTML - Size: 16.6 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 7 - Forks: 2
FunGI-cap/CRISPR-screening-vocabulary
Size: 1.95 KB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
TheJacksonLaboratory/geneweaver-aon
Ortholog/homolog mapping for Geneweaver
Language: Python - Size: 16.5 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
anuraglimdi/tnseq-essential-genes
Predicting gene essentiality from transposon insertion sequencing (TnSeq) genomics data with machine learning
Language: Jupyter Notebook - Size: 20.5 MB - Last synced at: 8 months ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0
sivkri/Schizosaccharomyces-pombe-Chip-seq-analysis
After getting the bed file from the Peak calling, we can annotate and create all downstream analysis of two sets of data
Language: R - Size: 116 KB - Last synced at: 6 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
m-jahn/rebar Fork of Asplund-Samuelsson/rebar
Ralstonia eutropha BarSeq analysis
Language: Perl - Size: 146 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
LRPatel1/SLIDER
SLIDER: Scoring Soriting Screens with Laplace and Differential Rank
Language: R - Size: 46.9 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
qslin/Bulk-Segregation-Analysis
Developed by Qiaoshan Lin in Yaowu Yuan Lab
Language: Shell - Size: 20.5 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 2
m-jahn/CRISPRi-lib-pipe
Pipeline to process CRISPRi library sequencing data
Language: R - Size: 147 MB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 1
hqcasanova/arrayexpress-search
Responsive single-page search app for EMBL's Array Express archive. Written in Backbone + Marionette.
Language: JavaScript - Size: 905 KB - Last synced at: 2 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
hessJ/FLEET
Functional LD-interval EnrichmEnt Test -- biological interpretation of GWAS signals
Language: R - Size: 568 MB - Last synced at: over 2 years ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 0
