GitHub topics: plant-genomics
almeidasilvaf/rplaza
An R interface to the PLAZA database for plant comparative genomics
Language: R - Size: 99.6 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
simonorozcoarias/Inpactor2
Inpactor2: LTR retrotransposon detector and classificator using Deep Learning
Language: Jupyter Notebook - Size: 215 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 27 - Forks: 4
almeidasilvaf/planttfhunter
An R package to identify plant transcription factors from protein sequence data and classify them in families
Language: R - Size: 4.27 MB - Last synced at: 6 days ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
IBCHgenomic/plant-resistance-gene-miner
plant resistance gene miner for linking the resistance gene to genbank id.
Language: Python - Size: 1000 Bytes - Last synced at: 4 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
almeidasilvaf/plant_transcriptomes
Data and code used in the Plant Genomes dashboard
Language: R - Size: 1.72 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
Amii-Open-Source/PlanTT
This code repository is associated to the paper entitled "PlanTT: a two-tower contrastive approach for the prediction of gene expression difference in plants", which was submitted to RECOMB24. This project is the fruit of a collaboration between the Alberta Machine Intelligence Institute (Amii) and National Research Council Canada (NRC).
Language: Python - Size: 12.6 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
Orpowell/NLR-Assembler
NLR-Assembler is a command line tool for improving RenSeq Assemblies using linked-read sequencing by 10x Genomics.
Language: Python - Size: 427 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
plantgenomes/plantgenomes.github.io
"植物基因组"(plantgenomes)微信公众号
Size: 163 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
lauralwd/azolla_MYBs
Phylogeny and classification of Azolla filiculoides MYB genes
Language: HTML - Size: 76 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
lauralwd/LAR_phylogeny_gungor-et-al-2020
Phylogenetic tree of LAR and other PIP family enzymes as shown in Güngör et al. 2020. This repository details all code and intermediate files used.
Language: Jupyter Notebook - Size: 26 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0