GitHub topics: hidden-markov-models

Repositories

helske/seqHMM

Multivariate and Multichannel Discrete Hidden Markov Models for Categorical Sequences

Language: R - Size: 17.3 MB - Last synced at: about 23 hours ago - Pushed at: 1 day ago - Stars: 99 - Forks: 30

probml/dynamax

A Python package for probabilistic state space modeling with JAX

Language: Python - Size: 248 MB - Last synced at: 4 days ago - Pushed at: 7 days ago - Stars: 821 - Forks: 95

Beliavsky/TimeSeriesAnalysisBooks

List of books on time series analysis, with links to code where available

Size: 258 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 2 - Forks: 0

ddbourgin/numpy-ml

Machine learning, in numpy

Language: Python - Size: 10 MB - Last synced at: 5 days ago - Pushed at: over 1 year ago - Stars: 16,087 - Forks: 3,802

dilettagoglia/Signal-Processing

🔁Graphical models, Recurrent Neural Networks and SIFT algorithm for image processing, signal analysis and timeseries forecasting (MD Course: Intelligent Systems for Pattern Recognition)

Language: Python - Size: 7.08 MB - Last synced at: 5 days ago - Pushed at: almost 5 years ago - Stars: 4 - Forks: 0

CSFelix/nlp-2.2-conditional-probability

💬 Conditional Probability Clearly Explained

Language: Jupyter Notebook - Size: 1.88 MB - Last synced at: 6 days ago - Pushed at: 23 days ago - Stars: 2 - Forks: 0

TravisWheelerLab/BATH

Better Alignments with Translated HMMER

Language: C - Size: 65.9 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 19 - Forks: 4

ds4v/vietnamese-pos-tagging

Gán nhãn từ loại Tiếng Việt sử dụng mô hình Hidden Markov kết hợp thuật toán Viterbi

Language: Jupyter Notebook - Size: 4.23 MB - Last synced at: about 23 hours ago - Pushed at: over 3 years ago - Stars: 10 - Forks: 7

BRAINML-GT/onehot-hmmglm Fork of JerrySoybean/onehot-hmmglm

One-hot HMM-GLM. GLM with a one-hot prior on top of a hidden Markov model.

Language: Jupyter Notebook - Size: 4.85 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

JerrySoybean/onehot-hmmglm

One-hot HMM-GLM. GLM with a one-hot prior on top of a hidden Markov model.

Language: Jupyter Notebook - Size: 3.9 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 1

mbari-org/ecoz2rs

ECOZ2 in Rust

Language: Rust - Size: 396 KB - Last synced at: 5 days ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 0

almeidasilvaf/planttfhunter

An R package to identify plant transcription factors from protein sequence data and classify them in families

Language: R - Size: 4.27 MB - Last synced at: 8 days ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

loelschlaeger/fHMM

Hidden Markov models for finance

Language: R - Size: 153 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 17 - Forks: 10

BenRickard16/Spatio-Temporal_Statistics-IV

All of my R code from the Uncertainty Quantification IV module at Durham University

Language: R - Size: 4.58 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

vsimkus/pmr2024-hmm

An official repository for tutorials of Probabilistic Modelling and Reasoning (2023/2024) - a University of Edinburgh master's course.

Language: Jupyter Notebook - Size: 253 KB - Last synced at: 4 days ago - Pushed at: over 1 year ago - Stars: 23 - Forks: 9

cgre-aachen/bayseg

An unsupervised machine learning algorithm for the segmentation of spatial data sets.

Language: Jupyter Notebook - Size: 65.4 MB - Last synced at: about 1 month ago - Pushed at: almost 4 years ago - Stars: 63 - Forks: 15

eonu/sequentia

Scikit-Learn compatible HMM and DTW based sequence machine learning algorithms in Python.

Language: Python - Size: 43.7 MB - Last synced at: 4 days ago - Pushed at: 5 months ago - Stars: 63 - Forks: 9

fchamroukhi/SaMUraiS

StAtistical Models for the UnsupeRvised segmentAion of tIme-Series

Language: R - Size: 10.8 MB - Last synced at: 14 days ago - Pushed at: over 5 years ago - Stars: 11 - Forks: 1

iisys-hof/map-matching-2

High Performance Map Matching with Markov Decision Processes (MDPs) and Hidden Markov Models (HMMs).

Language: C++ - Size: 20.1 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 58 - Forks: 9

NorskRegnesentral/weak-supervision-for-NER 📦

Framework to learn Named Entity Recognition models without labelled data using weak supervision.

Language: Jupyter Notebook - Size: 13.7 MB - Last synced at: 4 months ago - Pushed at: about 4 years ago - Stars: 123 - Forks: 30

nickbrazeau/HMMERTIME

Infer blocks of identity by descent between samples from unphased haplotype data using an HMM

Language: R - Size: 1.28 MB - Last synced at: 28 days ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

luisdamiano/BayesHMM

Full Bayesian Inference for Hidden Markov Models

Language: R - Size: 69.9 MB - Last synced at: 4 months ago - Pushed at: over 6 years ago - Stars: 40 - Forks: 20

oliviergimenez/banana-book

Repo for a book on Bayesian capture-recapture w/ HMMs

Language: TeX - Size: 846 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 14 - Forks: 11

rahisenpai/CSE643-AI

Starter repository for Artificial Intelligence (CSE643) at IIITD, Monsoon'24

Language: Python - Size: 10.2 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

brunoschef/LSE_CapstoneProject

Using Hidden Markov modelling to establish emotional states in survey research

Language: Jupyter Notebook - Size: 253 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

dimitrisstyl7/bioinformatics-project

The goal of this project is to implement solutions to specific exercises from the "Introduction to Bioinformatics Algorithms" textbook.

Language: Python - Size: 5.28 MB - Last synced at: about 1 month ago - Pushed at: 6 months ago - Stars: 2 - Forks: 3

gregothebyteknight/rock-paper-scissors

Plays rock-paper-scissors with high win rate using Hidden Markov Models (as part of freecodecamp qualification)

Language: Python - Size: 3.91 KB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

bhmm/bhmm

Bayesian hidden Markov models toolkit

Language: Python - Size: 884 KB - Last synced at: 27 days ago - Pushed at: over 4 years ago - Stars: 47 - Forks: 14

The EM-BDD algorithm developed for learning Hidden Markov Models (HMMs) using Binary Decision Diagrams to optimize the learning process, offering a alternative to traditional methods such as the Baum-Welch algorithm.

Language: C - Size: 275 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

dmetivie/PeriodicHiddenMarkovModels.jl

Non-homogenous Hidden Markov Models

Language: Julia - Size: 161 KB - Last synced at: 11 days ago - Pushed at: 7 months ago - Stars: 5 - Forks: 1

idiap/FiniteStateTransducers.jl

Play with Weighted Finite State Transducers (WFST) in the Julia language.

Language: Julia - Size: 252 KB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 1

Nikhil-Kumar-Patel/Hidden-Makov-Model

Hidden Markov Models in stock price forecasting.

Language: Jupyter Notebook - Size: 1.75 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 9 - Forks: 5

thkox/bioinformatics_2023-multiple-exercises Fork of dimitrisstyl7/bioinformatics-project-2023

This project is a team assignment for the "Bioinformatics" course, offered in the 6th semester of the 2023 academic year at the University of Piraeus, Department of Informatics.

Language: Python - Size: 5.27 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

ApostolisSiampanis/bioinformatics_project_2023 Fork of dimitrisstyl7/bioinformatics-project-2023

Bioinformatics University Project

Language: Python - Size: 5.27 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

PraveenKumar-Rajendran/Udacity-Natural-Language-Processing-Engineer-Nanodegree

Projects Implemented for the Udacity Natural Language Processing Engineer Nanodegree Program

Size: 1.42 MB - Last synced at: about 2 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

idiap/HMMGradients.jl

Enables computing the gradient of the parameters of Hidden Markov Models (HMMs)

Language: Julia - Size: 256 KB - Last synced at: about 1 month ago - Pushed at: almost 4 years ago - Stars: 22 - Forks: 0

KayvanShah1/usc-csci544-applied-nlp-fall23

USC CSCI544 - Applied Natural Language Processing - Fall 2023 - Prof Mohammad Rostami

Language: Python - Size: 63.5 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 4 - Forks: 1

ltfschoen/AIND-Recognizer

Term 1 Project 3 Design a Sign Language Recognition System by Luke Schoen for Udacity Artificial Intelligence Nanodegree (AIND)

Language: Jupyter Notebook - Size: 2.14 MB - Last synced at: 29 days ago - Pushed at: about 8 years ago - Stars: 13 - Forks: 5

maxmouchet/HMMBase.jl 📦

Hidden Markov Models for Julia.

Language: Julia - Size: 5.38 MB - Last synced at: 7 days ago - Pushed at: almost 2 years ago - Stars: 94 - Forks: 12

melmasri/traveltimeHMM

Travel time prediction from GPS observations using an HMM

Language: R - Size: 27.1 MB - Last synced at: 6 months ago - Pushed at: over 2 years ago - Stars: 9 - Forks: 2

chintanckg/hmm-pos-tagger

Language: Jupyter Notebook - Size: 4.01 MB - Last synced at: 12 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

harripd/H2MMpythonlib

Photon By Photon Hidden Markov Modeling scripts based on Pirchi et. al. JPC 2016, 120, 13065, extended in Multi-parameter photon-by-photon hidden Markov modeling, Harris, P.D., Narducci, A., Gebhardt, C. et al. Multi-parameter photon-by-photon Hidden Markov Modeling. Nat Commun 13, 1000 (2022).

Language: Cython - Size: 117 MB - Last synced at: 9 months ago - Pushed at: 12 months ago - Stars: 4 - Forks: 0

poypoyan/edhsmm 📦

An(other) implementation of Explicit Duration Hidden Semi-Markov Models in Python 3

Language: Jupyter Notebook - Size: 218 KB - Last synced at: 11 months ago - Pushed at: 12 months ago - Stars: 8 - Forks: 3

aperezlebel/HiddenMarkovChain

Language: Python - Size: 145 KB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 1

georgesterpu/pyVSR

Python toolkit for Visual Speech Recognition

Language: Python - Size: 3.56 MB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 34 - Forks: 11

maxmouchet/VariationalH3M.jl

Variational Hierarchical EM for HMM clustering.

Language: Julia - Size: 51.8 KB - Last synced at: 7 days ago - Pushed at: about 5 years ago - Stars: 5 - Forks: 0

iman370/FCC-ML-with-python

Machine Learning with Python Course offered by FreeCodeCamp

Language: Jupyter Notebook - Size: 4.65 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

rug-compling/hmm-reps

Hidden Markov models for word representations

Language: Python - Size: 3.69 MB - Last synced at: about 1 year ago - Pushed at: about 7 years ago - Stars: 7 - Forks: 4

AarifahUllah/Hidden-Markov-Models

Using Hidden Markov Models (HMM) and Part-of-speech (POS) tagging, it was the most probable meaning of the sentence "Flies fly."

Language: Python - Size: 7.81 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

oliviergimenez/hmm-cr-nimble-isec2022-workshop

material for a workshop on Bayesian capture-recapture inference with hidden Markov models in Nimble

Language: HTML - Size: 157 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 0

KouritzinLab/UASTAT181-DMOMProj

Python Implementation of Discrete Markov Observation models.

Language: Jupyter Notebook - Size: 111 KB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

mirzaipatrik/Bayesian_HMM

Bayesian parameter estimation of HMMs in Julia

Language: Julia - Size: 4.38 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 3 - Forks: 0

Goykhman/Hidden_Markov_models

Rendition of a well known techniques: forward/backward, Baum-Welch, and Viterbi algorithms. Tested on a simulated random Hidden Markov processes.

Language: Jupyter Notebook - Size: 238 KB - Last synced at: about 1 year ago - Pushed at: almost 8 years ago - Stars: 2 - Forks: 0

yui-u/emerge-chord-function

The implementation of the paper: The Simulated Emergence of Chord Function (Uehara and Tojo; EvoMUSART2021).

Language: Python - Size: 194 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 1

valinsogna/HeadachePredictor-HMM

Predicting headache occurrences using Hidden Markov Models (HMMs). The dataset comprises 296 days of binary headache records. Analysis reveals cyclical patterns, with the DTMC Model yielding the best predictions. Wiener Process, sARIMA, Bayesian Normal Mixtures, DTMC, and Categorical Mixtures models are also reported.

Language: Jupyter Notebook - Size: 6.76 MB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

MrTejas/ML-Algos

A collection of fundamental Machine Learning Algorithms Implemented from scratch along-with their applications for various ML tasks like clustering, thresholding, data analysis, prediction, regression and image classification.

Language: Jupyter Notebook - Size: 174 MB - Last synced at: 2 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Avinash793/time-series-analysis-examples

Detailed implementation of various time series analysis models and concepts on real datasets.

Language: Jupyter Notebook - Size: 3.15 MB - Last synced at: 2 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

spykard/Classification-HMMs

A state-of-the art Hidden Markov Model Framework for Sentiment Analysis as well as Classification Tasks in general.

Language: Python - Size: 38.5 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 8 - Forks: 1

rohan-sahgal/POS-Tagging-with-HMMs

Python program that assigns part-of-speech tags to words in a sequence. Trained and executed using Hidden Markov Models and variation on Viterbi Algorithm.

Language: Python - Size: 1.94 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

Freguglia/mrf2d

An R package for analysis of Markov Random Fields on 2-dimensional lattices.

Language: R - Size: 34.7 MB - Last synced at: 1 day ago - Pushed at: over 1 year ago - Stars: 9 - Forks: 1

wiedenhoeft/HaMMLET

Fast Bayesian Hidden Markov Model with Wavelet Compression

Language: C++ - Size: 2.52 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 17 - Forks: 4

alperali/Otto

Osmanlı Arşivlerinin Bilgisayarla Transkripsiyonu

Language: C++ - Size: 79.1 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

fchamroukhi/mixHMMR_m

Clustering and segmentation of heterogeneous functional data (sequential data) with regime changes by mixture of Hidden Markov Model Regressions (MixFHMMR) and the EM algorithm

Language: MATLAB - Size: 149 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 2

shu-hai/FDRhmrf

A FDR controlling procedure based on hidden Markov random field (Biometrics-15 paper)

Language: C++ - Size: 1.01 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 4 - Forks: 0

Chaoukia/Probabilistic-Graphical-Models

Probabilistic graphical models home works (MVA - ENS Cachan)

Language: Jupyter Notebook - Size: 2.4 MB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 5 - Forks: 0

negar7918/GHMMs

Language: Python - Size: 252 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

negar7918/oMHMM

Language: Python - Size: 292 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

francescapoli98/pattern-recognition-systems

Storing of the jupyter notebooks delivered throughout the semester as midterms for the Intelligent Systems for Pattern Recognition [ISPR] course, a.y. 2022/23

Language: Jupyter Notebook - Size: 26.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

jonzia/ProbabilisticGraphs

Designing and training probabilistic graphical models (MATLAB).

Language: MATLAB - Size: 3.81 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

jmrieck17/CSC-7810-Homework-2

Language: Jupyter Notebook - Size: 1.83 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

peterzee-tsien/Clojure-Language-Models

An insight into computational linguistics with the clojure functions

Language: Clojure - Size: 5.86 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

Axel-Bravo/18_udacity_aind 📦

Artificial Intelligence Nanodregree from Udacity

Language: Jupyter Notebook - Size: 405 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 5 - Forks: 3

karlosos/data_mining

Data mining course - 2020

Language: Jupyter Notebook - Size: 17 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

anassinator/markov-sentence-correction

Markov Chains and Hidden Markov Models to generate and correct sentences

Language: Python - Size: 1.91 MB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 19 - Forks: 4

Blazz123/J-996651

Pegasus Is a Quality Remote Administration Tool + Hvnc, it offers support for 20 Hidden browsers.Pegasus hVNC can run a hidden desktop and can execute many browsers by copying the profile of the existing user and all this is completely hidden from the user's eyes! The same goes fot apps like outlook,foxmail, and thunderbird! Pegasus also offers one

Size: 8.79 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

echen805/AIND

Udacity Artificial Intelligence Nano Degree

Language: HTML - Size: 8.59 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

shrebox/Natural-Language-Processing

Compilation of Natural Language Processing (NLP) codes. BONUS: Link to Information Retrieval (IR) codes compilation. (checkout the readme)

Language: Python - Size: 1.85 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 12 - Forks: 0

antonio-f/Udacity-Artificial-Intelligence-Nanodegree

Projects from Udacity's Artificial Intelligence Nanodegree (August 2017 cohort) - TERM 1.

Language: Jupyter Notebook - Size: 3 MB - Last synced at: about 2 months ago - Pushed at: over 7 years ago - Stars: 4 - Forks: 0

holmen1/babbel

Natural Language Processing

Language: Python - Size: 865 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

lrgr/sigma

SigMa is a probabilistic model for the sequential dependencies of mutation signatures

Language: Python - Size: 14.5 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 15 - Forks: 7

Sarsoo/markov-models

Post-grad speech, audio processing & recognition coursework - Hidden Markov Model invesigations. Achieved 98%

Language: Jupyter Notebook - Size: 2.63 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1

igomezv/RazonamientoProbabilistico

Curso de 10 horas

Language: Jupyter Notebook - Size: 11.6 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 7

jafetgado/Cel7ML

Sequence-function relationships with ML

Language: Python - Size: 11.4 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 4 - Forks: 2

davidgturner/hmmMusicGen

hidden markov model based music composition project

Language: Java - Size: 627 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0

heitorbaldo/Notes-Bioinformatics

Bioinformatics coursework notes and codes

Size: 2.53 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

georgid/pypYIN Fork of ronggong/pypYIN

python pYIN

Language: Python - Size: 4.67 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 8 - Forks: 3

Seb943/Markov4Tennis

R script to modelize a tennis match with Markov chains (games, tie-breaks, sets, match)

Language: R - Size: 409 KB - Last synced at: 2 months ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 1

idiap/TIDIGITSRecipe.jl

A Julia recipe for training an ASR system using the TIDIGITS database

Language: Julia - Size: 9.91 MB - Last synced at: about 1 month ago - Pushed at: almost 4 years ago - Stars: 4 - Forks: 1

Emotional-Text-to-Speech/hmm-for-emo-tts

:computer: A repository with comprehensive instructions for using the Festvox toolkit for generating Emotional speech :speaker: from text

Language: CSS - Size: 65.5 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 32 - Forks: 9

janluke/cs188

Projects for the UC Berkeley "Artificial Intelligence" course (CS 188)

Language: Python - Size: 2.04 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 19 - Forks: 14

sohailahmedkhan/Sentence-Completion-using-Hidden-Markov-Models

The goal of this script is to implement three langauge models to perform sentence completion, i.e. given a sentence with a missing word to choose the correct one from a list of candidate words. The way to use a language model for this problem is to consider a possible candidate word for the sentence at a time and then ask the language model which version of the sentence is the most probable one.

Language: Python - Size: 5.86 KB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 6 - Forks: 0