Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: protein-domains
littleblackfish/c-di-GMP
Mapping domain co-occurrence networks with emphasis on c-d-GMP binding domains.
Language: Jupyter Notebook - Size: 2.03 MB - Last synced: about 2 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0
NCBI-Codeathons/Domain_HMM_Boundaries
Refining Domain Boundaries and Performing Large Scale Parsing
Language: Jupyter Notebook - Size: 27.7 MB - Last synced: 2 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 1
LKremer/showTree
showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
Language: Python - Size: 65.4 KB - Last synced: about 2 months ago - Pushed: about 5 years ago - Stars: 28 - Forks: 8
thekaplanlab/msabrowser
🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
Language: JavaScript - Size: 412 KB - Last synced: 2 months ago - Pushed: almost 2 years ago - Stars: 29 - Forks: 6
BIONF/FAS
FAS - Tool for Feature Architecture Similarity calculation
Language: Python - Size: 1.09 MB - Last synced: 3 days ago - Pushed: 2 months ago - Stars: 4 - Forks: 1
cmbi/metadome
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
Language: Python - Size: 2.45 MB - Last synced: 18 days ago - Pushed: about 1 year ago - Stars: 6 - Forks: 2
uds-helms/MutaNET
Automated analysis tool for mutations in promoters, transcription factor binding sites, coding regions and protein domains in the context of gene regulatory networks.
Language: Python - Size: 333 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1
sib-swiss/pftools3
A suite of tools to build and search generalized profiles
Language: C - Size: 40.8 MB - Last synced: about 1 month ago - Pushed: 11 months ago - Stars: 9 - Forks: 7
evocellnet/ptm_hotspots
Estimate PTM hotspots in protein sequence alignments
Language: Python - Size: 3.02 MB - Last synced: 9 months ago - Pushed: over 5 years ago - Stars: 9 - Forks: 2
ostrokach/uniparc_xml_parser
UniParc dataset describing ~300 million protein sequences converted into relational tables accessible through Google BigQuery (and as Parquet files).
Language: Rust - Size: 31.1 MB - Last synced: 20 days ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0
DSIMB/SWORD2
SWift and Optimized Recognition of protein Domains
Language: Perl - Size: 57.6 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 9 - Forks: 1
sinc-lab/Comparison-of-Protein-learning
Comparison of protein learning
Language: Jupyter Notebook - Size: 17.7 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 3 - Forks: 1
michalbukowski/pfam-genomes
Snakemake pipeline for searching genomic sequences for those encoding proteins containing domains of choice
Language: Python - Size: 189 KB - Last synced: 4 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0
furacca/brivez
Brivez is a bioinformatic tool thought as Quality of Life's improvement, providing high quantity of data in a snap, giving you a quick view on what you could find inside your transcriptome/sequences' list.
Language: Python - Size: 1.43 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
lafita/tadoss
:open_hands: TADOSS: TAndem DOmain Swap Stability predictor
Language: Python - Size: 1.04 MB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 6 - Forks: 0
victoria-r/BLASTandTransdecoder
Using BLAST and Transdecoder.
Language: Shell - Size: 1000 Bytes - Last synced: 12 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
damianosmel/dom2vec
dom2vec: Protein domain embeddings
Language: Python - Size: 74.9 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0
psipred/dompred
Protein sequence domain predictor
Language: Perl - Size: 61.5 KB - Last synced: about 1 month ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0
ISYSLAB-HUST/Res-Dom
protein domain prediction
Language: Python - Size: 40.3 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0
almeidasilvaf/planttfhunter
An R package to identify plant transcription factors from protein sequence data and classify them in families
Language: R - Size: 4.27 MB - Last synced: 8 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
HrishiDhondge/CroMaSt
CroMaSt (Cross Mapper of domain Structural instances) is an automated iterative workflow to clarify domain definition by cross-mapping of domain structural instances between domain databases.
Language: Common Workflow Language - Size: 72.3 KB - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 0 - Forks: 0
furacca/cuterle
THIS PROJECT IS NO LONGER SUPPORTED See Brivez Instead!! https://github.com/furacca/brivez/ - ------------------------------------------ - Cuterle is a bioinformatic tool which return an output file containing every domain annotated by InterProScan via Pfam or SMART analysis from the list of protein submitted.
Language: Python - Size: 3.17 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0
pmastrogiovanni/kunitz_hmm
HMM protein domain prediction
Language: Jupyter Notebook - Size: 542 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0
CSB-KUL/yMap
An automated method to map yeast variants to proteins modifications and functional regions
Language: Python - Size: 11.3 MB - Last synced: 26 days ago - Pushed: over 6 years ago - Stars: 5 - Forks: 6
bio2bel/interpro
A Bio2BEL package for converting InterPro to BEL
Language: Python - Size: 129 KB - Last synced: 25 days ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0
