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GitHub / cmbi / metadome
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cmbi%2Fmetadome
Stars: 6
Forks: 2
Open Issues: 24
License: mit
Language: Python
Repo Size: 2.45 MB
Dependencies:
50
Created: about 7 years ago
Updated: 7 months ago
Last pushed: about 1 year ago
Last synced: about 1 month ago
Topics: domain-homology, gene-annotation, genes, genetic-tolerance, genetics, pathogenic-variants, pathogenicity, protein-annotation, protein-domains, proteins, variant-annotations, variant-interpretation
Files
Dependencies
- Flask ==1.0.2
- Flask-DebugToolbar ==0.10.1
- Flask-JSGlue ==0.3
- Flask-Mail ==0.9.1
- Flask-RESTful ==0.3.6
- Flask-SQLAlchemy ==2.3.2
- Flask-Script ==2.0.6
- Flask-WTF ==0.14.2
- Jinja2 ==2.10.1
- MarkupSafe ==1.0
- PyVCF ==0.6.8
- PyYAML ==4.2b1
- SQLAlchemy ==1.3.0
- WTForms ==2.1
- Werkzeug ==0.15.3
- amqp ==2.3.2
- aniso8601 ==2.0.1
- argh ==0.26.2
- billiard ==3.5.0.3
- biopython ==1.70
- blinker ==1.4
- celery ==4.2.0
- click ==6.7
- coverage ==4.5.1
- gunicorn ==19.8.1
- itsdangerous ==0.24
- kombu ==4.2.1
- lockfile ==0.12.2
- mock ==2.0.0
- nose ==1.3.7
- numpy ==1.13.3
- pandas ==0.21.0
- pathtools ==0.1.2
- psycopg2 ==2.7.3.2
- pydot ==1.2.3
- pyparsing ==2.2.0
- pysam ==0.13
- python-dateutil ==2.6.1
- pytz ==2017.3
- redis ==2.10.6
- scikit-learn ==0.19.1
- scipy ==1.0.0
- six ==1.11.0
- sqlalchemy-schemadisplay ==1.3
- vine ==1.1.4
- watchdog ==0.8.3
- python 3.5 build