Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: pypi: PyVCF
Variant Call Format (VCF) parser for Python
22 versions
Latest release: about 8 years ago
10 dependent packages
38,582 downloads last month
View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/PyVCF
View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/jamescasbon%2FPyVCF
Dependent Repos 280
saifrahmed/tfx-local
- ==0.6.8 tfx/examples/workshop/notebooks/requirements.txt
Size: 6.07 MB - Last synced: 12 months ago - Pushed: over 1 year ago
SwatiGiri/GenderCheck
- ==0.6.8 requirements.txt
Size: 76.9 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
Omairss/BeyondBias
Tool to help users reduce bias- ==0.6.8 requirements.txt
Size: 13.4 MB - Last synced: 9 months ago - Pushed: over 1 year ago
hscasn/junkyard
Old, useless stuff that I'm hoarding- ==0.6.8 aslproject/.ipynb_checkpoints/requirements-checkpoint.txt
Size: 692 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
sijomonbenny/main
- ==0.6.8 requirements.txt
Size: 20.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
Aswathi-Nair/Main-project
- ==0.6.8 requirements.txt
Size: 20.2 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
codechaitu/mumma-code
- ==0.6.8 requirements.txt
Size: 419 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
jgeofil/google-research Fork of google-research/google-research
Google Research- >=0.6.8 frechet_audio_distance/requirements.txt
Size: 330 MB - Last synced: 6 months ago - Pushed: almost 2 years ago
azenin/healthspanpaper
This repository consists of jupyter notebooks with python, bash and R code for reproducing results of paper Zenin et al. "Identification of 12 genetic loci associated with human healthspan".- ==0.6.8 requirements.txt
Size: 113 KB - Last synced: 7 months ago - Pushed: over 1 year ago
jakob-tu/zebrafishframework
- ==0.6.8 requirements.txt
Size: 1.83 MB - Last synced: 11 months ago - Pushed: over 1 year ago
kevinbache/find_phone
- ==0.6.8 requirements.txt
Size: 9.55 MB - Last synced: 13 days ago - Pushed: over 1 year ago
nilosoftware/snpy Fork of superbobry/snpy
A wrapper-library for reading openSNP data- ==0.4.4 requirements.txt
Size: 108 KB - Last synced: about 1 year ago - Pushed: over 9 years ago
tyronemsaunders/genome_scipy_jupyter
- ==0.6.8 requirements.txt
Size: 271 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
AlexanderNenninger/DynamicalSystems1-SS2020
- ==0.6.8 requirements.txt
Size: 23.8 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
UMCUGenetics/Dx_resources
Resources used in diagnostics pipelines- ==0.6.8 ExomeDepth/requirements.txt
Size: 8.68 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
abdo3a/PcG_finder
protein homologous finder- ==0.6.8 requirements.txt
Size: 8.07 MB - Last synced: 2 months ago - Pushed: about 1 year ago
SVIPdb/svip
Coordinates the various SVIP sub-repos- ==0.6.8 svip_api/requirements.txt
Size: 63.5 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
google/patents-public-data
Patent analysis using the Google Patents Public Datasets on BigQuery- ==0.6.8 models/claim_breadth/requirements.txt
Size: 9.97 MB - Last synced: 2 days ago - Pushed: 22 days ago
stephenshank/superseal
Reference guided viral quasispecies reconstruction- >=0.6.8 setup.py
Size: 14.9 MB - Last synced: 10 days ago - Pushed: 11 days ago
EdgarACarneiro/fcup-bdcc
Projects developed for 'Big Data & Cloud Computing', a first year subject of the Master's Degree in Network and Information Systems Engineering @ FCUP.- ==0.6.8 Projects/p2/requirements.txt
Size: 13.3 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
nouyang-curoverse/server Fork of ga4gh/ga4gh-server
A reference implementation of the APIs defined in the schemas repository.- ==0.6.7 requirements.txt
Size: 3.93 MB - Last synced: about 1 year ago - Pushed: over 8 years ago
knoxcarey/server Fork of ga4gh/ga4gh-server
A reference implementation of the APIs defined in the schemas repository.- ==0.6.7 requirements.txt
Size: 3.93 MB - Last synced: about 1 year ago - Pushed: over 8 years ago
Alltroist/Master-work
Материалы к выпускной квалификационной работе- ==0.6.8 CACAO/requirements.txt
Size: 35.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
mejuhi/session-m
- ==0.6.8 requirements.txt
Size: 1.31 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
BRCAChallenge/brca-exchange
Overall management and deployment of the BRCA Exchange web portal and pipeline scripts- ==0.6.8 pipeline/requirements.txt
Size: 158 MB - Last synced: 20 days ago - Pushed: about 1 month ago
mahsa-sa/pyfish
- ==0.6.8 requirements.txt
Size: 1.84 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
AmanGotchu/BeatItBackend
- ==0.6.8 requirements.txt
Size: 19.1 MB - Last synced: 23 days ago - Pushed: over 1 year ago
hammerlab/concordance
Concordance between variant callers- ==0.6.7 requirements.txt
Size: 3.28 MB - Last synced: 9 months ago - Pushed: over 9 years ago
ucsd-ml-arts/ml-art-final-ferda
ml-art-final-ferda created by GitHub Classroom- ==0.6.8 requirements.txt
Size: 9.5 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
kvaggelakos/twitter-sentiment-gcp
A project to collect and visualize sentiment scores for tweets across various hashtags- ==0.6.8 processing/requirements.txt
Size: 636 KB - Last synced: 20 days ago - Pushed: over 1 year ago
molonc/sisyphus
Shahlab workflow and data management automation- ==0.6.8 workflows/requirements.txt
Size: 2.56 MB - Last synced: 5 days ago - Pushed: 12 days ago
molgenis/easybuild-easyconfigs Fork of easybuilders/easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.- ==0.6.8 easybuild/easyconfigs/p/PythonPlus/PythonPlus-2.7.16-v21.08.1-requirements.txt
Size: 40.1 MB - Last synced: 21 days ago - Pushed: 11 months ago
sayedtenkanen/google-research Fork of google-research/google-research
Google Research- >=0.6.8 frechet_audio_distance/requirements.txt
Size: 287 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
danmaclean/programming_with_python
- ==0.6.8 requirements.txt
Size: 3.33 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
knaufk/demo-beam-summit-2018
Python Streaming Pipelines with Beam on Flink - Demo- ==0.6.8 requirements.txt
Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
ktel1218/Beam-Python-Demo
A Short Demo of Apache's Beam using the Python SDK- ==0.6.8 requirements.txt
Size: 52.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago
PolyAI-LDN/conversational-datasets
Large datasets for conversational AI- ==0.6.8 requirements.txt
Size: 178 KB - Last synced: about 1 month ago - Pushed: over 4 years ago
simpsonlab/ncov-parser
- ==0.6.8 requirements.txt
Size: 47.9 KB - Last synced: 18 days ago - Pushed: almost 2 years ago
gxercavins/dataflow-samples
Examples using Google Cloud Dataflow - Apache Beam- ==0.6.8 quick-draw/requirements.txt
Size: 381 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
frubino/mgkit
MGKit: Metagenomics Framework- >=0.6.0 setup.py
Size: 30.1 MB - Last synced: about 1 month ago - Pushed: over 1 year ago
eddyod/pipeline_utility
- ==0.6.8 requirements.txt
Size: 3.55 MB - Last synced: about 2 months ago - Pushed: over 1 year ago
shahcompbio/montage
Visualization platform for single cell genomics- * scripts/pip-requires.txt
- * scripts/setup.py
Size: 2.17 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
mrichters/pVACtools Fork of griffithlab/pVACtools
- * setup.py
Size: 338 MB - Last synced: 16 days ago - Pushed: 17 days ago
sarthakksu/covid-low-income-bam
- >=0.6.8 frechet_audio_distance/requirements.txt
Size: 265 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
naturesdata/CorrelationProject
- ==0.6.8 requirements.txt
Size: 450 KB - Last synced: about 1 year ago - Pushed: over 2 years ago
aframires/drum-loop-synthesis
Generating drum loops using the Wave-U-Net conditioned on intuitive parameters.- ==0.6.8 FAD_evaluation/frechet_audio_distance/requirements.txt
Size: 10.3 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
COMBAT-TB/vcf2neo
A tool to import SnpEff annotated files to a Neo4j Graph database- * setup.py
Size: 38.1 MB - Last synced: 12 months ago - Pushed: over 1 year ago
juanluislopez24/vulnerabilityScannerDashboard
Scan the web and search for vulnerabilities on servers- ==0.6.8 requirements.txt
Size: 15.9 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
frankligy/SNAF
Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation- ==0.6.8 AltAnalyze/requirements_all.txt
Size: 86.6 MB - Last synced: 21 days ago - Pushed: 22 days ago
elnitskilab/MutationalAnalysisDemo
Demo Mutational Analysis- ==0.6.8 requirements.txt
Size: 2.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
billbialas/ACG
ACG Demo- ==0.6.8 requirements.txt
Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
Tarkiyah/googleResearch
- >=0.6.8 frechet_audio_distance/requirements.txt
Size: 187 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
afonsobspinto/Master-Informatics-and-Computer-Engineering
A repository to host my student projects at @FEUP @FCUP @UGent- ==0.6.8 BDCC/Projects/p2/requirements.txt
Size: 1.37 GB - Last synced: about 1 year ago - Pushed: over 1 year ago
Alexfray4eg/searcher
- >=0.6.8 frechet_audio_distance/requirements.txt
Size: 187 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
ColineG/CRM_Dashboard
CRM with dashboard- ==0.6.8 requirements.txt
Size: 50.8 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
bhorkar/geolocation_tensorflow_2.0
Geolocation using radio parameters (TF 2.0)- ==0.6.8 requirements.txt
Size: 22.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
CFSAN-Biostatistics/snp-pipeline
SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organisms sequenced from samples of interest to food safety.- >=0.6.7 setup.py
Size: 133 MB - Last synced: 29 days ago - Pushed: almost 1 year ago
med-team/strelka
strelka2 germline and somatic small variant caller- >=0.6.0 src/python/deNovoQualityScore/test/test_requirements.txt
Last synced: over 1 year ago
UMCUGenetics/SHARC
- ==0.6.8 requirements.txt
Size: 12.3 MB - Last synced: 9 months ago - Pushed: about 1 year ago
intelliseq/workflows
- ==0.6.8 src/main/docker/reports/mobigen/requirements.txt
Last synced: 10 months ago
ayyoubmarroun/dataflow_streaming_demo
- ==0.6.8 requirements.txt
Size: 5.29 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
treangenlab/quaid
Scripts for assigning PANGO lineages to wastewater samples based on quasi-unique and characteristic mutations.- ==0.6.8 sarscov2ww-requirements.txt
Last synced: about 1 year ago
wyleung/pySVtools
A collection of tools to work on VCF files for analysis of Structural Variation events.- ==0.6.7 requirements.txt
Size: 55.7 KB - Last synced: 9 days ago - Pushed: almost 8 years ago
Illumina/strelka
Strelka2 germline and somatic small variant caller- >=0.6.0 src/python/deNovoQualityScore/test/test_requirements.txt
Size: 220 MB - Last synced: about 1 month ago - Pushed: over 2 years ago
DouglasAbrams/wgs-sample-qc-env-setup
- ==0.6.8 requirements_pip.txt
Size: 16.6 KB - Last synced: 12 months ago - Pushed: about 3 years ago
neksa/mutagene
Python library and package for mutational analysis- * Pipfile
Size: 27.8 MB - Last synced: 7 months ago - Pushed: over 1 year ago
jxtSamFrimpong/Oldway
a betway live roulette scrapper- ==0.6.8 requirements.txt
Size: 15.8 MB - Last synced: 12 months ago - Pushed: over 1 year ago
bifxcore/ngsdb 📦
Genomics Comparison Database and Application- ==0.6.7 requirements/base.txt
Size: 192 MB - Last synced: 13 days ago - Pushed: almost 9 years ago
ga4gh/ga4gh-server 📦
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24- ==0.6.7 dev-requirements.txt
Size: 10.1 MB - Last synced: 19 days ago - Pushed: over 6 years ago
apietrelli/myVCF
myVCF: a web-based platform for target and exome mutations data management- ==0.6.8 requirements.txt
Size: 21.4 MB - Last synced: 7 months ago - Pushed: about 3 years ago
rli99/undr_rover
Unmapped primer directed ROVER- * setup.py
Size: 496 KB - Last synced: about 2 months ago - Pushed: almost 9 years ago
hammerlab/cycledash
Variant Caller Analysis Dashboard and Data Management System- ==0.6.7 requirements.txt
Size: 80.2 MB - Last synced: 7 months ago - Pushed: about 8 years ago
biothings/myvariant.info
MyVariant.info: A BioThings API for human variant annotations- >=0.6.7 requirements_hub.txt
- >=0.6.7 src/hub/dataload/sources/dbsnp/requirements.txt
- >=0.6.8 src/hub/dataload/sources/exac/requirements.txt
- >=0.6.8 src/hub/dataload/sources/geno2mp/requirements.txt
Size: 12.9 MB - Last synced: 1 day ago - Pushed: 1 day ago
kokizzu/google-research Fork of google-research/google-research
Google Research- >=0.6.8 frechet_audio_distance/requirements.txt
Size: 594 MB - Last synced: about 7 hours ago - Pushed: about 8 hours ago
seandavi/SDST
- >=0.6.8 setup.py
Size: 95.7 KB - Last synced: 13 days ago - Pushed: almost 7 years ago
katekimani/serverless_pipelines
- ==0.6.8 requirements.txt
Size: 22.5 KB - Last synced: 3 months ago - Pushed: over 1 year ago
qinguangjun/conversational-datasets
- ==0.6.8 requirements.txt
Size: 162 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
CRFlibrary/CRF_BQCloud
- ==0.6.8 requirements.txt
Size: 1.91 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
sanger-pathogens/SnpEffWrapper
Takes a VCF and applies annotations from a GFF using SnpEff- * setup.py
Size: 61.5 KB - Last synced: about 1 year ago - Pushed: over 5 years ago
leducquangpm/tasean
Target Sequence Annalysis- * requirements.txt
Size: 5.4 MB - Last synced: about 1 year ago - Pushed: about 2 years ago
Grelot/anvage
ANnotation Variants GEnome is a toolkit software to perform routine operations that involve VCF, GFF3 and FASTA genome files- * requirements.txt
- * setup.py
Size: 34.2 KB - Last synced: about 2 months ago - Pushed: over 2 years ago
shahcompbio/cbioportal-tools
Tools for generating and manipulating data files in the formats required by cBioPortal.- ==0.6.8 requirements.txt
Size: 57.2 MB - Last synced: 5 days ago - Pushed: over 1 year ago
google/driblet 📦
- ==0.6.8 requirements.txt
Size: 1.01 MB - Last synced: 2 days ago - Pushed: 12 months ago
VictorGeaGarcia/NLP
- ==0.6.8 requirements.txt
Size: 702 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
evsv/NNEvaluator
A project to benchmark the performance of Keras NN models by iterating over different hyperparameters/architectures and measuring metrics of interest- ==0.6.8 requirements.txt
Size: 144 MB - Last synced: 5 days ago - Pushed: over 1 year ago
aliarham11/pipeline-api
- ==0.6.8 requirements.txt
Size: 30.3 KB - Last synced: 9 months ago - Pushed: over 1 year ago
Sage-Bionetworks/CommonCompute
Common compute resources for Sage data scientists- * python3_requirements.txt
- * python_requirements.txt
Size: 85.9 KB - Last synced: 23 days ago - Pushed: about 7 years ago
sein-tao/pyBioUtil
A collection of scripts and modules for bioinfomatics file access- * setup.py
Size: 36.1 KB - Last synced: about 13 hours ago - Pushed: over 5 years ago
RyuaNerin/sangji-haksik-channel
상지대 식단표 카카오톡 채널 API 서버- ==0.6.8 tel-number/requirement.txt
Size: 312 KB - Last synced: 2 days ago - Pushed: 12 days ago
paolo2299/betscrape
- ==0.6.8 etl/python/requirements.txt
Size: 9.18 MB - Last synced: 12 months ago - Pushed: over 1 year ago
zhihou7/HOI-CL
Series of work (ECCV2020, CVPR2021, CVPR2021, ECCV2022) about Compositional Learning for Human-Object Interaction Exploration- ==0.6.8 requirements.txt
Size: 13.3 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
ionox0/pyannotate
VCF annotation- ==0.6.8 requirements.txt
Size: 984 KB - Last synced: 7 days ago - Pushed: over 1 year ago
libor-m/scrimer
A pipeline producing primers for sites distinguishing two close species using transcriptome reads and a reference genome.- * setup.py
Size: 4.06 MB - Last synced: 12 days ago - Pushed: over 8 years ago