Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: pypi: PyVCF

Variant Call Format (VCF) parser for Python
22 versions
Latest release: about 8 years ago
10 dependent packages
38,582 downloads last month

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/PyVCF

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/jamescasbon%2FPyVCF

Dependent Repos 280

saifrahmed/tfx-local
  • ==0.6.8 tfx/examples/workshop/notebooks/requirements.txt

Size: 6.07 MB - Last synced: 12 months ago - Pushed: over 1 year ago

SwatiGiri/GenderCheck
  • ==0.6.8 requirements.txt

Size: 76.9 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

Omairss/BeyondBias
Tool to help users reduce bias
  • ==0.6.8 requirements.txt

Size: 13.4 MB - Last synced: 9 months ago - Pushed: over 1 year ago

hscasn/junkyard
Old, useless stuff that I'm hoarding
  • ==0.6.8 aslproject/.ipynb_checkpoints/requirements-checkpoint.txt

Size: 692 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

sijomonbenny/main
  • ==0.6.8 requirements.txt

Size: 20.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

Aswathi-Nair/Main-project
  • ==0.6.8 requirements.txt

Size: 20.2 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

codechaitu/mumma-code
  • ==0.6.8 requirements.txt

Size: 419 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

jgeofil/google-research Fork of google-research/google-research
Google Research
  • >=0.6.8 frechet_audio_distance/requirements.txt

Size: 330 MB - Last synced: 6 months ago - Pushed: almost 2 years ago

azenin/healthspanpaper
This repository consists of jupyter notebooks with python, bash and R code for reproducing results of paper Zenin et al. "Identification of 12 genetic loci associated with human healthspan".
  • ==0.6.8 requirements.txt

Size: 113 KB - Last synced: 7 months ago - Pushed: over 1 year ago

jakob-tu/zebrafishframework
  • ==0.6.8 requirements.txt

Size: 1.83 MB - Last synced: 11 months ago - Pushed: over 1 year ago

kevinbache/find_phone
  • ==0.6.8 requirements.txt

Size: 9.55 MB - Last synced: 13 days ago - Pushed: over 1 year ago

nilosoftware/snpy Fork of superbobry/snpy
A wrapper-library for reading openSNP data
  • ==0.4.4 requirements.txt

Size: 108 KB - Last synced: about 1 year ago - Pushed: over 9 years ago

tyronemsaunders/genome_scipy_jupyter
  • ==0.6.8 requirements.txt

Size: 271 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

AlexanderNenninger/DynamicalSystems1-SS2020
  • ==0.6.8 requirements.txt

Size: 23.8 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

UMCUGenetics/Dx_resources
Resources used in diagnostics pipelines
  • ==0.6.8 ExomeDepth/requirements.txt

Size: 8.68 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

abdo3a/PcG_finder
protein homologous finder
  • ==0.6.8 requirements.txt

Size: 8.07 MB - Last synced: 2 months ago - Pushed: about 1 year ago

SVIPdb/svip
Coordinates the various SVIP sub-repos
  • ==0.6.8 svip_api/requirements.txt

Size: 63.5 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

google/patents-public-data
Patent analysis using the Google Patents Public Datasets on BigQuery
  • ==0.6.8 models/claim_breadth/requirements.txt

Size: 9.97 MB - Last synced: 2 days ago - Pushed: 22 days ago

stephenshank/superseal
Reference guided viral quasispecies reconstruction
  • >=0.6.8 setup.py

Size: 14.9 MB - Last synced: 10 days ago - Pushed: 11 days ago

EdgarACarneiro/fcup-bdcc
Projects developed for 'Big Data & Cloud Computing', a first year subject of the Master's Degree in Network and Information Systems Engineering @ FCUP.
  • ==0.6.8 Projects/p2/requirements.txt

Size: 13.3 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

nouyang-curoverse/server Fork of ga4gh/ga4gh-server
A reference implementation of the APIs defined in the schemas repository.
  • ==0.6.7 requirements.txt

Size: 3.93 MB - Last synced: about 1 year ago - Pushed: over 8 years ago

knoxcarey/server Fork of ga4gh/ga4gh-server
A reference implementation of the APIs defined in the schemas repository.
  • ==0.6.7 requirements.txt

Size: 3.93 MB - Last synced: about 1 year ago - Pushed: over 8 years ago

Alltroist/Master-work
Материалы к выпускной квалификационной работе
  • ==0.6.8 CACAO/requirements.txt

Size: 35.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

mejuhi/session-m
  • ==0.6.8 requirements.txt

Size: 1.31 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

BRCAChallenge/brca-exchange
Overall management and deployment of the BRCA Exchange web portal and pipeline scripts
  • ==0.6.8 pipeline/requirements.txt

Size: 158 MB - Last synced: 20 days ago - Pushed: about 1 month ago

mahsa-sa/pyfish
  • ==0.6.8 requirements.txt

Size: 1.84 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

AmanGotchu/BeatItBackend
  • ==0.6.8 requirements.txt

Size: 19.1 MB - Last synced: 23 days ago - Pushed: over 1 year ago

hammerlab/concordance
Concordance between variant callers
  • ==0.6.7 requirements.txt

Size: 3.28 MB - Last synced: 9 months ago - Pushed: over 9 years ago

ucsd-ml-arts/ml-art-final-ferda
ml-art-final-ferda created by GitHub Classroom
  • ==0.6.8 requirements.txt

Size: 9.5 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

PathoScope/PathoVar
  • * setup.py

Size: 13.7 MB - Last synced: 9 months ago - Pushed: over 8 years ago

kvaggelakos/twitter-sentiment-gcp
A project to collect and visualize sentiment scores for tweets across various hashtags
  • ==0.6.8 processing/requirements.txt

Size: 636 KB - Last synced: 20 days ago - Pushed: over 1 year ago

molonc/sisyphus
Shahlab workflow and data management automation
  • ==0.6.8 workflows/requirements.txt

Size: 2.56 MB - Last synced: 5 days ago - Pushed: 12 days ago

molgenis/easybuild-easyconfigs Fork of easybuilders/easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
  • ==0.6.8 easybuild/easyconfigs/p/PythonPlus/PythonPlus-2.7.16-v21.08.1-requirements.txt

Size: 40.1 MB - Last synced: 21 days ago - Pushed: 11 months ago

sayedtenkanen/google-research Fork of google-research/google-research
Google Research
  • >=0.6.8 frechet_audio_distance/requirements.txt

Size: 287 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

danmaclean/programming_with_python
  • ==0.6.8 requirements.txt

Size: 3.33 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

knaufk/demo-beam-summit-2018
Python Streaming Pipelines with Beam on Flink - Demo
  • ==0.6.8 requirements.txt

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

ktel1218/Beam-Python-Demo
A Short Demo of Apache's Beam using the Python SDK
  • ==0.6.8 requirements.txt

Size: 52.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago

PolyAI-LDN/conversational-datasets
Large datasets for conversational AI
  • ==0.6.8 requirements.txt

Size: 178 KB - Last synced: about 1 month ago - Pushed: over 4 years ago

simpsonlab/ncov-parser
  • ==0.6.8 requirements.txt

Size: 47.9 KB - Last synced: 18 days ago - Pushed: almost 2 years ago

gxercavins/dataflow-samples
Examples using Google Cloud Dataflow - Apache Beam
  • ==0.6.8 quick-draw/requirements.txt

Size: 381 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

frubino/mgkit
MGKit: Metagenomics Framework
  • >=0.6.0 setup.py

Size: 30.1 MB - Last synced: about 1 month ago - Pushed: over 1 year ago

eddyod/pipeline_utility
  • ==0.6.8 requirements.txt

Size: 3.55 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

shahcompbio/montage
Visualization platform for single cell genomics
  • * scripts/pip-requires.txt
  • * scripts/setup.py

Size: 2.17 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

mrichters/pVACtools Fork of griffithlab/pVACtools
  • * setup.py

Size: 338 MB - Last synced: 16 days ago - Pushed: 17 days ago

sarthakksu/covid-low-income-bam
  • >=0.6.8 frechet_audio_distance/requirements.txt

Size: 265 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

naturesdata/CorrelationProject
  • ==0.6.8 requirements.txt

Size: 450 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

aframires/drum-loop-synthesis
Generating drum loops using the Wave-U-Net conditioned on intuitive parameters.
  • ==0.6.8 FAD_evaluation/frechet_audio_distance/requirements.txt

Size: 10.3 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

COMBAT-TB/vcf2neo
A tool to import SnpEff annotated files to a Neo4j Graph database
  • * setup.py

Size: 38.1 MB - Last synced: 12 months ago - Pushed: over 1 year ago

juanluislopez24/vulnerabilityScannerDashboard
Scan the web and search for vulnerabilities on servers
  • ==0.6.8 requirements.txt

Size: 15.9 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

frankligy/SNAF
Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation
  • ==0.6.8 AltAnalyze/requirements_all.txt

Size: 86.6 MB - Last synced: 21 days ago - Pushed: 22 days ago

elnitskilab/MutationalAnalysisDemo
Demo Mutational Analysis
  • ==0.6.8 requirements.txt

Size: 2.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

billbialas/ACG
ACG Demo
  • ==0.6.8 requirements.txt

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

Tarkiyah/googleResearch
  • >=0.6.8 frechet_audio_distance/requirements.txt

Size: 187 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

afonsobspinto/Master-Informatics-and-Computer-Engineering
A repository to host my student projects at @FEUP @FCUP @UGent
  • ==0.6.8 BDCC/Projects/p2/requirements.txt

Size: 1.37 GB - Last synced: about 1 year ago - Pushed: over 1 year ago

Alexfray4eg/searcher
  • >=0.6.8 frechet_audio_distance/requirements.txt

Size: 187 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

ColineG/CRM_Dashboard
CRM with dashboard
  • ==0.6.8 requirements.txt

Size: 50.8 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

bhorkar/geolocation_tensorflow_2.0
Geolocation using radio parameters (TF 2.0)
  • ==0.6.8 requirements.txt

Size: 22.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

CFSAN-Biostatistics/snp-pipeline
SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organisms sequenced from samples of interest to food safety.
  • >=0.6.7 setup.py

Size: 133 MB - Last synced: 29 days ago - Pushed: almost 1 year ago

med-team/strelka
strelka2 germline and somatic small variant caller
  • >=0.6.0 src/python/deNovoQualityScore/test/test_requirements.txt

Last synced: over 1 year ago

UMCUGenetics/SHARC
  • ==0.6.8 requirements.txt

Size: 12.3 MB - Last synced: 9 months ago - Pushed: about 1 year ago

intelliseq/workflows
  • ==0.6.8 src/main/docker/reports/mobigen/requirements.txt

Last synced: 10 months ago

ayyoubmarroun/dataflow_streaming_demo
  • ==0.6.8 requirements.txt

Size: 5.29 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

treangenlab/quaid
Scripts for assigning PANGO lineages to wastewater samples based on quasi-unique and characteristic mutations.
  • ==0.6.8 sarscov2ww-requirements.txt

Last synced: about 1 year ago

wyleung/pySVtools
A collection of tools to work on VCF files for analysis of Structural Variation events.
  • ==0.6.7 requirements.txt

Size: 55.7 KB - Last synced: 9 days ago - Pushed: almost 8 years ago

Illumina/strelka
Strelka2 germline and somatic small variant caller
  • >=0.6.0 src/python/deNovoQualityScore/test/test_requirements.txt

Size: 220 MB - Last synced: about 1 month ago - Pushed: over 2 years ago

DouglasAbrams/wgs-sample-qc-env-setup
  • ==0.6.8 requirements_pip.txt

Size: 16.6 KB - Last synced: 12 months ago - Pushed: about 3 years ago

neksa/mutagene
Python library and package for mutational analysis
  • * Pipfile

Size: 27.8 MB - Last synced: 7 months ago - Pushed: over 1 year ago

jxtSamFrimpong/Oldway
a betway live roulette scrapper
  • ==0.6.8 requirements.txt

Size: 15.8 MB - Last synced: 12 months ago - Pushed: over 1 year ago

bifxcore/ngsdb 📦
Genomics Comparison Database and Application
  • ==0.6.7 requirements/base.txt

Size: 192 MB - Last synced: 13 days ago - Pushed: almost 9 years ago

ga4gh/ga4gh-server 📦
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  • ==0.6.7 dev-requirements.txt

Size: 10.1 MB - Last synced: 19 days ago - Pushed: over 6 years ago

apietrelli/myVCF
myVCF: a web-based platform for target and exome mutations data management
  • ==0.6.8 requirements.txt

Size: 21.4 MB - Last synced: 7 months ago - Pushed: about 3 years ago

rli99/undr_rover
Unmapped primer directed ROVER
  • * setup.py

Size: 496 KB - Last synced: about 2 months ago - Pushed: almost 9 years ago

hammerlab/cycledash
Variant Caller Analysis Dashboard and Data Management System
  • ==0.6.7 requirements.txt

Size: 80.2 MB - Last synced: 7 months ago - Pushed: about 8 years ago

biothings/myvariant.info
MyVariant.info: A BioThings API for human variant annotations
  • >=0.6.7 requirements_hub.txt
  • >=0.6.7 src/hub/dataload/sources/dbsnp/requirements.txt
  • >=0.6.8 src/hub/dataload/sources/exac/requirements.txt
  • >=0.6.8 src/hub/dataload/sources/geno2mp/requirements.txt

Size: 12.9 MB - Last synced: 1 day ago - Pushed: 1 day ago

kokizzu/google-research Fork of google-research/google-research
Google Research
  • >=0.6.8 frechet_audio_distance/requirements.txt

Size: 594 MB - Last synced: about 7 hours ago - Pushed: about 8 hours ago

seandavi/SDST
  • >=0.6.8 setup.py

Size: 95.7 KB - Last synced: 13 days ago - Pushed: almost 7 years ago

katekimani/serverless_pipelines
  • ==0.6.8 requirements.txt

Size: 22.5 KB - Last synced: 3 months ago - Pushed: over 1 year ago

qinguangjun/conversational-datasets
  • ==0.6.8 requirements.txt

Size: 162 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

CRFlibrary/CRF_BQCloud
  • ==0.6.8 requirements.txt

Size: 1.91 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

sanger-pathogens/SnpEffWrapper
Takes a VCF and applies annotations from a GFF using SnpEff
  • * setup.py

Size: 61.5 KB - Last synced: about 1 year ago - Pushed: over 5 years ago

leducquangpm/tasean
Target Sequence Annalysis
  • * requirements.txt

Size: 5.4 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

Grelot/anvage
ANnotation Variants GEnome is a toolkit software to perform routine operations that involve VCF, GFF3 and FASTA genome files
  • * requirements.txt
  • * setup.py

Size: 34.2 KB - Last synced: about 2 months ago - Pushed: over 2 years ago

shahcompbio/cbioportal-tools
Tools for generating and manipulating data files in the formats required by cBioPortal.
  • ==0.6.8 requirements.txt

Size: 57.2 MB - Last synced: 5 days ago - Pushed: over 1 year ago

google/driblet 📦
  • ==0.6.8 requirements.txt

Size: 1.01 MB - Last synced: 2 days ago - Pushed: 12 months ago

VictorGeaGarcia/NLP
  • ==0.6.8 requirements.txt

Size: 702 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

evsv/NNEvaluator
A project to benchmark the performance of Keras NN models by iterating over different hyperparameters/architectures and measuring metrics of interest
  • ==0.6.8 requirements.txt

Size: 144 MB - Last synced: 5 days ago - Pushed: over 1 year ago

aliarham11/pipeline-api
  • ==0.6.8 requirements.txt

Size: 30.3 KB - Last synced: 9 months ago - Pushed: over 1 year ago

Sage-Bionetworks/CommonCompute
Common compute resources for Sage data scientists
  • * python3_requirements.txt
  • * python_requirements.txt

Size: 85.9 KB - Last synced: 23 days ago - Pushed: about 7 years ago

sein-tao/pyBioUtil
A collection of scripts and modules for bioinfomatics file access
  • * setup.py

Size: 36.1 KB - Last synced: about 13 hours ago - Pushed: over 5 years ago

RyuaNerin/sangji-haksik-channel
상지대 식단표 카카오톡 채널 API 서버
  • ==0.6.8 tel-number/requirement.txt

Size: 312 KB - Last synced: 2 days ago - Pushed: 12 days ago

paolo2299/betscrape
  • ==0.6.8 etl/python/requirements.txt

Size: 9.18 MB - Last synced: 12 months ago - Pushed: over 1 year ago

zhihou7/HOI-CL
Series of work (ECCV2020, CVPR2021, CVPR2021, ECCV2022) about Compositional Learning for Human-Object Interaction Exploration
  • ==0.6.8 requirements.txt

Size: 13.3 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

ionox0/pyannotate
VCF annotation
  • ==0.6.8 requirements.txt

Size: 984 KB - Last synced: 7 days ago - Pushed: over 1 year ago

libor-m/scrimer
A pipeline producing primers for sites distinguishing two close species using transcriptome reads and a reference genome.
  • * setup.py

Size: 4.06 MB - Last synced: 12 days ago - Pushed: over 8 years ago