Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub / azenin / healthspanpaper
This repository consists of jupyter notebooks with python, bash and R code for reproducing results of paper Zenin et al. "Identification of 12 genetic loci associated with human healthspan".
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/azenin%2Fhealthspanpaper
Stars: 4
Forks: 3
Open Issues: 24
License: mit
Language: Jupyter Notebook
Repo Size: 113 KB
Dependencies:
231
Created: over 5 years ago
Updated: 7 months ago
Last pushed: over 1 year ago
Last synced: 7 months ago
Files
Loading...
Readme
Loading...
Dependencies
requirements.txt
pypi
- Babel ==1.3
- Click ==7.0
- Cython ==0.28.5
- HeapDict ==1.0.0
- Jinja2 ==2.10
- Markdown ==2.6.11
- MarkupSafe ==1.0
- Pillow ==3.1.2
- PubChemPy ==1.0.4
- PyEntrezId ==1.5.8.2
- PyNaCl ==1.3.0
- PyVCF ==0.6.8
- PyYAML ==3.13
- Pygments ==2.1.3
- Pyrex ==0.9.8.5
- Pyste ==0.9.10
- SQLAlchemy ==1.2.10
- SecretStorage ==2.1.3
- Send2Trash ==1.5.0
- Werkzeug ==0.14.1
- absl-py ==0.3.0
- appdirs ==1.4.3
- argcomplete ==0.8.1
- argh ==0.26.1
- asciitree ==0.3.3
- asn1crypto ==0.24.0
- astor ==0.7.1
- atomicwrites ==1.2.1
- attrs ==18.2.0
- backports-abc ==0.5
- backports.functools-lru-cache ==1.5
- backports.lzma ==0.0.13
- backports.shutil-get-terminal-size ==1.0.0
- backports.weakref ==1.0.post1
- bcrypt ==3.1.4
- beautifulsoup4 ==4.4.1
- bgen-reader ==2.0.7
- bibtexparser ==1.0.1
- biopython ==1.72
- bitarray ==0.8.3
- bleach ==2.1.3
- blessings ==1.6
- bokeh ==0.13.0
- boto3 ==1.9.41
- botocore ==1.12.41
- bpython ==0.15
- cachetools ==3.0.0
- certifi ==2018.10.15
- cffi ==1.11.5
- chardet ==3.0.4
- cloudpickle ==0.6.1
- cmapPy ==3.3.3
- colorama ==0.3.7
- configparser ==3.5.0
- cryptography ==2.3.1
- curtsies ==0.2.6
- cycler ==0.10.0
- cytoolz ==0.9.0.1
- cyvcf2 ==0.10.0
- dask ==1.0.0
- datacache ==1.1.5
- debtcollector ==1.3.0
- decorator ==4.3.0
- dispy ==4.9.1
- distributed ==1.23.3
- docopt ==0.6.2
- docutils ==0.14
- entrypoints ==0.2.3
- enum34 ==1.1.6
- et-xmlfile ==1.0.1
- fasteners ==0.14.1
- funcsigs ==1.0.2
- functools32 ==3.2.3.post2
- future ==0.17.1
- futures ==3.2.0
- gast ==0.2.0
- graphviz ==0.9
- greenlet ==0.4.9
- grpcio ==1.14.0
- gtfparse ==1.2.0
- h5py ==2.8.0
- html5lib ==1.0.1
- idna ==2.7
- iotop ==0.6
- ipaddress ==1.0.22
- ipykernel ==4.8.2
- ipython ==5.8.0
- ipython-genutils ==0.2.0
- ipywidgets ==7.2.1
- iso8601 ==0.1.11
- jdcal ==1.4
- jmespath ==0.9.3
- joblib ==0.12.5
- jsonschema ==2.5.1
- jupyter ==1.0.0
- jupyter-client ==5.2.3
- jupyter-console ==5.2.0
- jupyter-contrib-core ==0.3.3
- jupyter-contrib-nbextensions ==0.5.0
- jupyter-core ==4.4.0
- jupyter-highlight-selected-word ==0.2.0
- jupyter-latex-envs ==1.4.4
- jupyter-nbextensions-configurator ==0.4.0
- keyring ==7.3
- keystoneauth1 ==2.4.1
- kiwisolver ==1.0.1
- lifelines ==0.14.6
- line-profiler ==2.1.2
- llvmlite ==0.25.0
- locket ==0.2.0
- lxml ==4.2.3
- matplotlib ==2.2.2
- matplotlib-venn ==0.11.5
- mdv ==1.6.3
- memoized-property ==1.0.3
- memory-profiler ==0.54.0
- mercurial ==3.7.3
- mistune ==0.8.3
- mock ==2.0.0
- monotonic ==1.5
- more-itertools ==4.3.0
- msgpack ==0.5.6
- msgpack-python ==0.4.6
- mygene ==3.0.0
- nbconvert ==5.3.1
- nbformat ==4.4.0
- nbstripout ==0.3.2
- netaddr ==0.7.18
- netifaces ==0.10.4
- nose ==1.3.7
- notebook ==5.5.0
- numba ==0.40.0
- numcodecs ==0.5.5
- numexpr ==2.6.6
- numpy ==1.15.4
- openpyxl ==2.5.8
- oslo.i18n ==3.5.0
- oslo.serialization ==2.4.0
- oslo.utils ==3.8.0
- packaging ==18.0
- pandas ==0.23.4
- pandas-plink ==1.2.28
- pandocfilters ==1.4.2
- paramiko ==2.4.2
- paratext ==0.1.1rc1
- partd ==0.3.9
- pathlib2 ==2.3.3
- pathtools ==0.1.2
- pbr ==5.1.1
- pexpect ==4.6.0
- pickleshare ==0.7.4
- pipreqs ==0.4.9
- plinkio ==0.9.6
- pluggy ==0.8.0
- positional ==1.0.1
- prettytable ==0.7.2
- progressbar ==2.5
- progressbar2 ==3.38.0
- progressbar33 ==2.4
- prompt-toolkit ==1.0.15
- protobuf ==3.6.0
- psutil ==5.4.8
- ptyprocess ==0.6.0
- py ==1.7.0
- pyOpenSSL ==18.0.0
- pyasn1 ==0.4.4
- pybgen ==0.6.0
- pycos ==4.7.7
- pycparser ==2.19
- pycrypto ==2.6.1
- pycurl ==7.43.0
- pyensembl ==1.7.3
- pygobject ==3.20.0
- pyparsing ==2.3.0
- pytest ==4.0.1
- python-apt ==1.1.0b1
- python-dateutil ==2.7.5
- python-novaclient ==3.3.1
- python-termstyle ==0.1.10
- python-utils ==2.3.0
- pytz ==2018.7
- pyzmq ==17.0.0
- qtconsole ==4.3.1
- rednose ==1.1.1
- requests ==2.20.1
- rpy2 ==2.8.5
- s3fs ==0.1.6
- s3transfer ==0.1.13
- scandir ==1.9.0
- scikit-allel ==1.1.10
- scikit-learn ==0.19.1
- scipy ==1.1.0
- serializable ==0.1.1
- simplegeneric ==0.8.1
- simplejson ==3.16.0
- singledispatch ==3.4.0.3
- six ==1.12.0
- sklearn ==0.0
- sortedcontainers ==2.0.5
- sparse ==0.4.1
- stevedore ==1.12.0
- subprocess32 ==3.5.3
- tables ==3.4.4
- tabulate ==0.8.2
- tblib ==1.3.2
- tensorboard ==1.9.0
- tensorflow ==1.9.0
- termcolor ==1.1.0
- terminado ==0.8.1
- testpath ==0.3.1
- texttable ==1.5.0
- tinytimer ==0.0.0
- toolz ==0.9.0
- tornado ==5.1.1
- tqdm ==4.28.1
- traitlets ==4.3.2
- typechecks ==0.1.0
- urllib3 ==1.24.1
- urwid ==1.3.1
- virtualenv ==16.0.0
- watchdog ==0.8.3
- wcwidth ==0.1.7
- webencodings ==0.5.1
- widgetsnbextension ==3.2.1
- wrapt ==1.8.0
- xarray ==0.11.0
- xlrd ==1.1.0
- xmltodict ==0.10.1
- yarg ==0.1.9
- zarr ==2.2.0
- zict ==0.1.3