idrblab/AnnoPRO

Feature map and function annotation of Proteins

Language: Python - Size: 4.01 MB - Last synced at: 24 days ago - Pushed at: 11 months ago - Stars: 32 - Forks: 7

ClemSc/BLAST_2_LCA

Language: Python - Size: 95.7 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

usadellab/prot-scriber

Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or Diamond).

Language: Rust - Size: 124 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 5 - Forks: 5

vizkidd/QuickBLAST

BLAST without Sys.Call()

Language: C++ - Size: 7.23 MB - Last synced at: 4 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0

brandonsie/epitopefindr

R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.

Language: R - Size: 2.71 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 12 - Forks: 8

justin-tpb/ProtExtract

A Linux command-line tool to extract homologous proteins from proteomes using DIAMOND.

Language: Shell - Size: 36.1 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

AstraBert/PredGenesGetPepts

PredGenesGetPepts is an easy-to-use, beginner-friendly pipeline to call genes from fasta files, retrieve peptides and blasting them against a given protein database

Language: Shell - Size: 121 KB - Last synced at: 5 days ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

mansikath/whole-genome-sequencing-pipeline

A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.

Language: HTML - Size: 1.96 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

guzikine/pblast

This is my implementation of the protein BLAST algorithm together with GUI.

Language: Python - Size: 35.2 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

LinyunLiu/Bioinformatics

Unraveling Evolutionary Relationship between Fungi Species

Language: Shell - Size: 187 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

sophiagosselin/ICE_BLAST

Iterative Cluster Expansion BLAST. Captures very divergent homologous sequences via gradual search space expansion.

Language: Perl - Size: 3.57 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

victoria-r/BLASTandTransdecoder

Using BLAST and Transdecoder.

Language: Shell - Size: 1000 Bytes - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

cbalbin-bio/Submatch-BLAST-Parser

Parse consecutive matches in BLAST results.

Language: Python - Size: 7.81 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 0

pselva7/PlantAKRsClassification

To classify plant ado-keto reductase-domain (PF00248) containing proteins via blastp search

Language: Shell - Size: 4.59 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

hocinebib/ResConservScorePy

Pipeline to get a protein's residues conservation JSD scores

Language: Python - Size: 156 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 1

eannefawcett/Classifying-Gene-Locus-by-Protein-Composition

Modeling chromosomal gene location by protein composition

Language: Jupyter Notebook - Size: 42.6 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ifremer-bioinformatics/BLAST-PLAST-bench

Scripts to run benchmarks of BLAST and PLAST on a supercomputer

Language: Shell - Size: 144 KB - Last synced at: 5 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0