GitHub topics: mahmoodlab
mahmoodlab/CLAM
Open source tools for computational pathology - Nature BME
Language: Python - Size: 45.8 MB - Last synced at: 2 days ago - Pushed at: about 1 month ago - Stars: 1,317 - Forks: 419
mahmoodlab/CONCH
Vision-Language Pathology Foundation Model - Nature Medicine
Language: Python - Size: 1.22 MB - Last synced at: about 6 hours ago - Pushed at: about 2 months ago - Stars: 358 - Forks: 28
mahmoodlab/UNI
Pathology Foundation Model - Nature Medicine
Language: Jupyter Notebook - Size: 6.94 MB - Last synced at: 1 day ago - Pushed at: about 2 months ago - Stars: 465 - Forks: 66
mahmoodlab/MI-Zero
Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023
Language: Python - Size: 1.94 MB - Last synced at: 9 days ago - Pushed at: almost 2 years ago - Stars: 103 - Forks: 6
mahmoodlab/Patch-GCN
Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
Language: Python - Size: 1.16 GB - Last synced at: 10 days ago - Pushed at: about 1 year ago - Stars: 148 - Forks: 28
mahmoodlab/TANGLE
Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024
Language: Python - Size: 3.82 MB - Last synced at: 10 days ago - Pushed at: 7 months ago - Stars: 100 - Forks: 5
mahmoodlab/MCAT
Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021
Language: Jupyter Notebook - Size: 540 MB - Last synced at: 10 days ago - Pushed at: about 3 years ago - Stars: 200 - Forks: 40
mahmoodlab/SISH
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
Language: Python - Size: 963 KB - Last synced at: 18 days ago - Pushed at: almost 2 years ago - Stars: 102 - Forks: 27
mahmoodlab/PORPOISE
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
Language: Jupyter Notebook - Size: 194 MB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 204 - Forks: 38
mahmoodlab/SurvPath
Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024
Language: Python - Size: 99.6 MB - Last synced at: about 1 month ago - Pushed at: 6 months ago - Stars: 133 - Forks: 7
mahmoodlab/HistoFL
Federated Learning for Computational Pathology - Medical Image Analysis
Language: Python - Size: 500 KB - Last synced at: 18 days ago - Pushed at: over 3 years ago - Stars: 49 - Forks: 14
mahmoodlab/PathomicFusion
Fusing Histology and Genomics via Deep Learning - IEEE TMI
Language: Jupyter Notebook - Size: 42.4 MB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 300 - Forks: 84
mahmoodlab/TOAD
AI-based pathology predicts origins for cancers of unknown primary - Nature
Language: Python - Size: 2.79 MB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 172 - Forks: 49
AshrithSagar/CLAM-Colab
Implementing https://github.com/mahmoodlab/CLAM on Google Colab
Language: Jupyter Notebook - Size: 154 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
