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GitHub / sebastianffx / stainlib
Python 3 library for the augmentation & normalization of H&E images
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebastianffx%2Fstainlib
Stars: 50
Forks: 8
Open Issues: 3
License: mit
Language: Jupyter Notebook
Repo Size: 9.91 MB
Dependencies:
270
Created: over 3 years ago
Updated: 2 months ago
Last pushed: over 1 year ago
Last synced: 4 days ago
Topics: computational-pathology, histopathology, image-augmentation, image-normalization, image-processing, pathology
Files
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Readme
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Dependencies
setup.py
pypi
- matplotlib *
- numpy *
- opencv-python *
- pillow *
- scikit-image *
- spams-bin *
- Babel ==2.8.0
- Jinja2 ==2.11.2
- MarkupSafe ==1.1.1
- Pillow ==7.2.0
- PyWavelets ==1.1.1
- PyYAML ==5.3.1
- Pygments ==2.7.1
- QtPy ==1.9.0
- Send2Trash ==1.5.0
- Sphinx ==3.2.1
- alabaster ==0.7.12
- appdirs ==1.4.4
- argon2-cffi ==20.1.0
- async-generator ==1.10
- attrs ==20.2.0
- backcall ==0.2.0
- bleach ==3.2.1
- certifi ==2020.6.20
- cffi ==1.14.3
- cfgv ==3.2.0
- chardet ==3.0.4
- clang-format ==9.0.0
- cloudpickle ==1.6.0
- commonmark ==0.9.1
- coolname ==1.1.0
- cpufeature ==0.1.1
- cupy-cuda101 ==7.8.0
- cycler ==0.10.0
- dataclasses ==0.7
- decorator ==4.4.2
- defusedxml ==0.6.0
- distlib ==0.3.1
- docutils ==0.16
- dominate ==2.5.2
- entrypoints ==0.3
- fastrlock ==0.5
- filelock ==3.0.12
- future ==0.18.2
- h5py ==2.10.0
- horovod ==0.20.3
- identify ==1.5.4
- idna ==2.10
- imageio ==2.9.0
- imagesize ==1.2.0
- importlib-metadata ==2.0.0
- importlib-resources ==3.0.0
- iniconfig ==1.0.1
- ipykernel ==5.3.4
- ipython ==7.16.1
- ipython-genutils ==0.2.0
- ipywidgets ==7.5.1
- jedi ==0.17.2
- joblib ==0.17.0
- jsonschema ==3.2.0
- jupyter ==1.0.0
- jupyter-client ==6.1.7
- jupyter-console ==6.2.0
- jupyter-core ==4.6.3
- jupyterlab-pygments ==0.1.2
- kiwisolver ==1.2.0
- matplotlib ==3.3.2
- mistune ==0.8.4
- more-itertools ==8.5.0
- mpi4py ==3.0.3
- nbclient ==0.5.0
- nbconvert ==6.0.7
- nbformat ==5.0.7
- nest-asyncio ==1.4.1
- networkx ==2.5
- ninja ==1.10.0.post2
- nodeenv ==1.5.0
- nose ==1.3.7
- notebook ==6.1.4
- numpy ==1.19.2
- opencv-python ==4.4.0.44
- openslide-python ==1.1.2
- packaging ==20.4
- pandocfilters ==1.4.2
- parso ==0.7.1
- pexpect ==4.8.0
- pickleshare ==0.7.5
- piexif ==1.1.3
- pluggy ==0.13.1
- pre-commit ==2.7.1
- prometheus-client ==0.8.0
- prompt-toolkit ==3.0.7
- protobuf ==3.13.0
- psutil ==5.7.2
- ptyprocess ==0.6.0
- py ==1.9.0
- pycparser ==2.20
- pyparsing ==2.4.7
- pyrsistent ==0.17.3
- pytest ==6.0.2
- pytest-forked ==1.3.0
- python-dateutil ==2.8.1
- pytz ==2020.1
- pyvips ==2.1.13
- pyzmq ==19.0.2
- qtconsole ==4.7.7
- recommonmark ==0.6.0
- requests ==2.24.0
- runx ==0.0.6
- scikit-image ==0.17.2
- scikit-learn ==0.23.2
- scipy ==1.5.2
- shuffle ==0.9
- six ==1.15.0
- sklearn ==0.0
- snowballstemmer ==2.0.0
- sphinx-rtd-theme ==0.5.0
- sphinxcontrib-applehelp ==1.0.2
- sphinxcontrib-devhelp ==1.0.2
- sphinxcontrib-htmlhelp ==1.0.3
- sphinxcontrib-jsmath ==1.0.1
- sphinxcontrib-qthelp ==1.0.3
- sphinxcontrib-serializinghtml ==1.1.4
- tabulate ==0.8.7
- tensorboardX ==1.8
- terminado ==0.9.1
- testpath ==0.4.4
- threadpoolctl ==2.1.0
- tifffile ==2020.9.3
- toml ==0.10.1
- torch ==1.6.0
- torchsummary ==1.5.1
- torchvision ==0.7.0
- tornado ==6.0.4
- tqdm ==4.49.0
- traitlets ==4.3.3
- urllib3 ==1.25.10
- virtualenv ==20.0.31
- wcwidth ==0.2.5
- webencodings ==0.5.1
- widgetsnbextension ==3.5.1
- zipp ==3.2.0
- appnope 0.1.0
- argon2-cffi 20.1.0
- astroid 2.4.2
- async_generator 1.10
- attrs 20.2.0
- backcall 0.2.0
- blas 1.0
- bleach 3.2.1
- ca-certificates 2020.10.14
- certifi 2020.6.20
- cffi 1.14.3
- cloudpickle 1.6.0
- cycler 0.10.0
- cytoolz 0.11.0
- dask-core 2.30.0
- dbus 1.13.18
- decorator 4.4.2
- defusedxml 0.6.0
- entrypoints 0.3
- expat 2.2.10
- freetype 2.10.4
- gettext 0.19.8.1
- glib 2.66.1
- icu 58.2
- imageio 2.9.0
- importlib-metadata 2.0.0
- importlib_metadata 2.0.0
- intel-openmp 2019.4
- ipykernel 5.3.4
- ipython 7.18.1
- ipython_genutils 0.2.0
- ipywidgets 7.5.1
- isort 5.6.4
- jedi 0.17.2
- jinja2 2.11.2
- jpeg 9b
- jsonschema 3.2.0
- jupyter 1.0.0
- jupyter_client 6.1.7
- jupyter_console 6.2.0
- jupyter_core 4.6.3
- jupyterlab_pygments 0.1.2
- kiwisolver 1.3.0
- lazy-object-proxy 1.4.3
- lcms2 2.11
- libcxx 10.0.0
- libedit 3.1.20191231
- libffi 3.3
- libgfortran 3.0.1
- libiconv 1.16
- libpng 1.6.37
- libsodium 1.0.18
- libtiff 4.1.0
- llvm-openmp 10.0.0
- lz4-c 1.9.2
- markupsafe 1.1.1
- matplotlib-base 3.3.2
- mccabe 0.6.1
- mistune 0.8.4
- mkl 2019.4
- mkl-service 2.3.0
- mkl_fft 1.2.0
- mkl_random 1.1.1
- nbclient 0.5.1
- nbconvert 6.0.7
- nbformat 5.0.8
- ncurses 6.2
- nest-asyncio 1.4.1
- networkx 2.5
- notebook 6.1.4
- numpy 1.19.2
- numpy-base 1.19.2
- olefile 0.46
- openssl 1.1.1h
- packaging 20.4
- pandoc 2.11
- pandocfilters 1.4.2
- parso 0.7.0
- pcre 8.44
- pexpect 4.8.0
- pickleshare 0.7.5
- pillow 8.0.1
- pip 20.2.4
- prometheus_client 0.8.0
- prompt-toolkit 3.0.8
- prompt_toolkit 3.0.8
- ptyprocess 0.6.0
- pycparser 2.20
- pygments 2.7.1
- pylint 2.6.0
- pyparsing 2.4.7
- pyqt 5.9.2
- pyrsistent 0.17.3
- python 3.8.5
- python-dateutil 2.8.1
- pywavelets 1.1.1
- pyyaml 5.3.1
- pyzmq 19.0.2
- qt 5.9.7
- qtconsole 4.7.7
- qtpy 1.9.0
- readline 8.0
- scikit-image 0.17.2
- scipy 1.5.0
- send2trash 1.5.0
- setuptools 50.3.0
- sip 4.19.8
- six 1.15.0
- sqlite 3.33.0
- terminado 0.9.1
- testpath 0.4.4
- tifffile 2020.10.1
- tk 8.6.10
- toml 0.10.1
- toolz 0.11.1
- tornado 6.0.4
- traitlets 5.0.5
- wcwidth 0.2.5
- webencodings 0.5.1
- wheel 0.35.1
- widgetsnbextension 3.5.1
- wrapt 1.11.2
- xz 5.2.5
- yaml 0.2.5
- zeromq 4.3.3
- zipp 3.3.1
- zlib 1.2.11
- zstd 1.4.5