Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: rephetio
hetio/het.io
Source code for https://het.io website
Language: HTML - Size: 14.6 MB - Last synced: 24 days ago - Pushed: 3 months ago - Stars: 6 - Forks: 3
hetio/medline
Computing term cooccurrence in MEDLINE
Language: Jupyter Notebook - Size: 139 MB - Last synced: 24 days ago - Pushed: about 3 years ago - Stars: 16 - Forks: 4
dhimmel/SIDER4
Processing SIDER 4.1: the side effect resource
Language: Jupyter Notebook - Size: 13.2 MB - Last synced: 24 days ago - Pushed: over 8 years ago - Stars: 19 - Forks: 11
dhimmel/integrate
Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
Language: Jupyter Notebook - Size: 565 MB - Last synced: 24 days ago - Pushed: over 6 years ago - Stars: 29 - Forks: 16
dhimmel/pathways
A compilation of pathway gene sets
Language: Jupyter Notebook - Size: 2.38 MB - Last synced: 24 days ago - Pushed: about 8 years ago - Stars: 2 - Forks: 3
dhimmel/lincs
Library of Integrated Cellular Signatures L1000
Language: Jupyter Notebook - Size: 255 MB - Last synced: 24 days ago - Pushed: about 2 years ago - Stars: 25 - Forks: 5
dhimmel/indications
Processing high-throughput drug indication resources.
Language: HTML - Size: 42.2 MB - Last synced: 24 days ago - Pushed: about 8 years ago - Stars: 15 - Forks: 6
dhimmel/drugcentral
Converting DrugCentral data to Rephetio identifiers
Language: Jupyter Notebook - Size: 558 KB - Last synced: 24 days ago - Pushed: about 7 years ago - Stars: 4 - Forks: 0
hetio/hetionet
Hetionet: an integrative network of disease
Language: HTML - Size: 380 MB - Last synced: 24 days ago - Pushed: about 1 year ago - Stars: 239 - Forks: 65
dhimmel/drugbank
User-friendly extensions of the DrugBank database
Language: HTML - Size: 100 MB - Last synced: 24 days ago - Pushed: about 5 years ago - Stars: 169 - Forks: 73
dhimmel/obonet
OBO-formatted ontologies → networkx (Python 3)
Language: Python - Size: 102 KB - Last synced: 24 days ago - Pushed: about 1 year ago - Stars: 134 - Forks: 27
dhimmel/mesh
User-friendly extensions to MeSH
Language: Jupyter Notebook - Size: 80.7 MB - Last synced: 24 days ago - Pushed: over 8 years ago - Stars: 9 - Forks: 4
dhimmel/ppi
Compiling human protein–protein interactions
Language: Jupyter Notebook - Size: 7.84 MB - Last synced: 24 days ago - Pushed: about 8 years ago - Stars: 3 - Forks: 4
hetio/hetnetpy
Hetnets in Python (relocated from dhimmel/hetio)
Language: Python - Size: 798 KB - Last synced: 5 days ago - Pushed: 10 months ago - Stars: 89 - Forks: 28
dhimmel/bindingdb
Process BindingDB
Language: HTML - Size: 14.3 MB - Last synced: 24 days ago - Pushed: over 8 years ago - Stars: 8 - Forks: 5
dhimmel/disgenet
Processing the DisGeNET database of disease–gene association
Language: Jupyter Notebook - Size: 29.3 MB - Last synced: 24 days ago - Pushed: about 8 years ago - Stars: 9 - Forks: 4
dhimmel/clintrials
Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov
Language: Jupyter Notebook - Size: 90.6 MB - Last synced: 24 days ago - Pushed: almost 8 years ago - Stars: 24 - Forks: 6
dhimmel/gwas-catalog
Extracting disease-gene associations from the GWAS Catalog
Language: Jupyter Notebook - Size: 18.7 MB - Last synced: 24 days ago - Pushed: about 8 years ago - Stars: 2 - Forks: 6
dhimmel/bgee
Extracting anatomy-specific gene expression in humans from Bgee
Language: Jupyter Notebook - Size: 2.69 MB - Last synced: 24 days ago - Pushed: about 8 years ago - Stars: 2 - Forks: 2
dhimmel/learn
Machine learning and feature extraction for the Rephetio project
Language: Jupyter Notebook - Size: 562 MB - Last synced: 24 days ago - Pushed: 3 months ago - Stars: 4 - Forks: 5
dhimmel/rephetio
Miscellaneous Content for Project Rephetio to repurpose drugs
Language: Jupyter Notebook - Size: 213 MB - Last synced: 24 days ago - Pushed: over 1 year ago - Stars: 6 - Forks: 2
dhimmel/rephetio-manuscript
Markdown source for the Project Rephetio Manuscript https://doi.org/10.7554/eLife.26726
Language: HTML - Size: 33.8 MB - Last synced: 24 days ago - Pushed: over 1 year ago - Stars: 6 - Forks: 1
dhimmel/disease-ontology
User-friendly extensions to the Disease Ontology
Language: Web Ontology Language - Size: 13.7 MB - Last synced: 24 days ago - Pushed: over 7 years ago - Stars: 20 - Forks: 8
dhimmel/unichem
A python package for mapping compounds via UniChem
Language: Python - Size: 219 KB - Last synced: 24 days ago - Pushed: almost 9 years ago - Stars: 1 - Forks: 1
dhimmel/gene-ontology
User-friendly Gene Ontology annotations
Language: Jupyter Notebook - Size: 572 MB - Last synced: 24 days ago - Pushed: over 5 years ago - Stars: 7 - Forks: 6
dhimmel/hsdn
Analysis of the human symptoms–disease network
Language: HTML - Size: 1.38 MB - Last synced: 24 days ago - Pushed: about 7 years ago - Stars: 18 - Forks: 13
dhimmel/uniprot
Extract uniprot mappings to other vocabularies
Size: 26.3 MB - Last synced: 24 days ago - Pushed: about 9 years ago - Stars: 4 - Forks: 2
dhimmel/het.io-rep-guides
Neo4j Browser Guides for Project Rephetio Predictions
Language: Jupyter Notebook - Size: 122 MB - Last synced: 24 days ago - Pushed: over 6 years ago - Stars: 1 - Forks: 1
dhimmel/stargeo
Generating expression signatures for disease using STARGEO
Language: Jupyter Notebook - Size: 84.6 MB - Last synced: 24 days ago - Pushed: about 8 years ago - Stars: 2 - Forks: 1
dhimmel/entrez-gene
Processing the human Entrez Gene subset
Language: Jupyter Notebook - Size: 10.1 MB - Last synced: 24 days ago - Pushed: over 8 years ago - Stars: 3 - Forks: 1
dhimmel/gtex
GTEx Expression Analysis
Size: 3.67 MB - Last synced: 24 days ago - Pushed: almost 9 years ago - Stars: 3 - Forks: 2
dhimmel/het.io-rep-data
Data from Project Rephetio for the het.io website
Language: Jupyter Notebook - Size: 537 MB - Last synced: 24 days ago - Pushed: over 7 years ago - Stars: 2 - Forks: 3
hetio/repurpose-frontend
Frontend for https://het.io/repurpose/
Language: JavaScript - Size: 4.98 MB - Last synced: 24 days ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0
dhimmel/tissues
Gene–Tissue relationships from the TISSUES database
Size: 129 MB - Last synced: 24 days ago - Pushed: over 8 years ago - Stars: 2 - Forks: 1
dhimmel/doaf
Processing data from DOAF, the Disease Ontology Annotation Framework
Language: Jupyter Notebook - Size: 8.17 MB - Last synced: 24 days ago - Pushed: about 8 years ago - Stars: 1 - Forks: 0
dhimmel/erc
Processing human Evolutionary Rate Covariation data
Language: Jupyter Notebook - Size: 6.06 MB - Last synced: 24 days ago - Pushed: about 8 years ago - Stars: 1 - Forks: 0
dhimmel/diseases
Processing the DISEASES database
Language: Jupyter Notebook - Size: 37.5 MB - Last synced: 24 days ago - Pushed: about 8 years ago - Stars: 3 - Forks: 1
dhimmel/thinklytics
Continuous Thinklab project exports and analytics
Language: Jupyter Notebook - Size: 19.6 MB - Last synced: 24 days ago - Pushed: over 6 years ago - Stars: 0 - Forks: 2
dhimmel/uberon
User-friendly anatomical structures data from the Uberon Ontology
Language: Jupyter Notebook - Size: 4.43 MB - Last synced: 24 days ago - Pushed: over 8 years ago - Stars: 1 - Forks: 1
dhimmel/hetior
R tools for machine learning on hetnets
Language: R - Size: 12.7 KB - Last synced: 24 days ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0
dhimmel/adeptus
ADEPTUS -- differential gene expression signatures of disease
Size: 320 KB - Last synced: 24 days ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0
dhimmel/ensembl-api
Working wiht the Ensembl Perl API
Size: 102 KB - Last synced: 24 days ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0