GitHub topics: gtex
ropensci/gtexr
An R interface to the GTEx Portal API
Language: R - Size: 1.84 MB - Last synced at: 10 days ago - Pushed at: 11 days ago - Stars: 6 - Forks: 3
kevinhu/cancer_data
A unified downloader+preprocessor for cancer genomics datasets
Language: Python - Size: 669 KB - Last synced at: 13 days ago - Pushed at: about 1 year ago - Stars: 16 - Forks: 7
nuno-agostinho/psichomics
Interactive R package to quantify, analyse and visualise alternative splicing
Language: R - Size: 58.9 MB - Last synced at: about 21 hours ago - Pushed at: 7 days ago - Stars: 37 - Forks: 11
soedinglab/tejaas
Tejaas - a tool for discovering trans-eQTLs
Language: C - Size: 36.8 MB - Last synced at: 10 days ago - Pushed at: over 2 years ago - Stars: 11 - Forks: 0
thehyve/react-gtex-viz 📦
React components for visualisations from the GTEx web portal
Language: JavaScript - Size: 1.39 MB - Last synced at: 2 days ago - Pushed at: 7 months ago - Stars: 2 - Forks: 1
DiseaseTranscriptomicsLab/voyAGEr
⏳ Online graphical interface to explore age-related gene expression alterations in 49 GTEx human tissues
Language: HTML - Size: 1.92 GB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 2 - Forks: 0
ebi-gene-expression-group/atlas-gtex-bulk
Atlas analysis for controlled-access GTEx bulk datasets
Language: Python - Size: 978 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
vermasrijan/srijan-gsoc-2020
Healthcare-Researcher-Connector Package: Federated Learning tool for bridging the gap between Healthcare providers and researchers
Language: Jupyter Notebook - Size: 131 MB - Last synced at: 9 months ago - Pushed at: over 4 years ago - Stars: 17 - Forks: 5
greenelab/cimr
tool for continuously integrated meta-resource
Language: Python - Size: 34.3 MB - Last synced at: 6 days ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 2
zobaer53/flutter_login_template
Login template with Firebase GetX
Language: Dart - Size: 258 KB - Last synced at: 30 days ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
urmi-21/TCGA-Data-Analysis
Examples on processing and working with TCGA mutation and RNA-Seq data
Language: R - Size: 2.79 MB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 4 - Forks: 2
nanxstats/grex
Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data
Language: R - Size: 4.28 MB - Last synced at: 12 days ago - Pushed at: over 3 years ago - Stars: 8 - Forks: 2
bpark-research/TCGA_Spark
Language: Jupyter Notebook - Size: 1.61 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
KarakulakTulay/gtex-tcga-data-download
Describes how to download RNA-Seq controlled data from GTEx via sra-toolkit and from TCGA via GDC Data Transfer Tool
Size: 14.6 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 0
xuwenjian85/B-GEX
Blood-based multi-tissue gene expression inference with Bayesian regression
Language: Jupyter Notebook - Size: 66.7 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 0
tjiagoM/gtex-transcriptome-modelling
Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits
Language: Jupyter Notebook - Size: 53 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 9 - Forks: 2
sigven/gtexRNA
Gene expression retrieval with GTEx API
Language: R - Size: 3.76 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 1
Kuanhao-Chao/Transcript_Quantifier_Assessment
🩺 Assessing StringTie, Salmon, and Kallisto with simulated RNA-Seq reads with noises introduced in read- and annotation-level.
Language: Shell - Size: 8.98 MB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 1
lovelyscientist/rna-seq-vae
Synthetic gene expression data generation using Variational Auto-Encoder
Language: Python - Size: 9.16 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 10 - Forks: 4
reagan0323/MT-eQTL
Multi-Tissue eQTL
Language: Matlab - Size: 47.9 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 1
hwittich/GTEx-Sample-Classifier Fork of danielsarj/GTEx-Sample-Classifier
COMP479 - Machine Learning final project at Loyola University Chicago.
Size: 6.94 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
danielsarj/GTEx-Sample-Classifier
COMP479 - Machine Learning final project at Loyola University Chicago.
Language: Python - Size: 6.94 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1
nanxstats/exp2vec
🧬 Tissue-specific gene embeddings trained on GTEx data
Language: R - Size: 99.6 MB - Last synced at: 9 days ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 1
IMS-Bio2Core-Facility/GTExQuery
Multithreading, data handling, and file manipulation for the GTExSnake pipeline
Language: Python - Size: 302 KB - Last synced at: 23 days ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 1
greenelab/cimr-d
client to the cimr-d database for continuous integration and analysis using cimr
Language: Shell - Size: 5.86 MB - Last synced at: 2 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 3
dhimmel/gtex
GTEx Expression Analysis
Size: 3.67 MB - Last synced at: about 1 month ago - Pushed at: almost 10 years ago - Stars: 3 - Forks: 2
hessJ/geneAnnotation
Plot gene ontologies
Language: R - Size: 15.4 MB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 2 - Forks: 0
lcolladotor/recount-brain-bog19
Poster for Biology of Genomes 2019 (#bog19) on recount-brain
Language: HTML - Size: 3.33 MB - Last synced at: 3 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 3
jhrcook/tidy_GTEx
The GTEx data in a tidy format for use in R
Language: R - Size: 5.86 KB - Last synced at: 2 months ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 1
minesh1291/isb-cgc-dash-prep
Size: 8.79 KB - Last synced at: about 22 hours ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0
