rmgpanw/gtexr

An R interface to the GTEx Portal API

Language: R - Size: 3.61 MB - Last synced: 29 minutes ago - Pushed: about 8 hours ago - Stars: 1 - Forks: 0

DiseaseTranscriptomicsLab/voyAGEr

⏳ Online graphical interface to explore age-related gene expression alterations in 49 GTEx human tissues

Language: HTML - Size: 1.92 GB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0

nuno-agostinho/psichomics

Interactive R package to quantify, analyse and visualise alternative splicing

Language: R - Size: 56.1 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 33 - Forks: 12

greenelab/cimr

tool for continuously integrated meta-resource

Language: Python - Size: 34.3 MB - Last synced: about 1 month ago - Pushed: about 3 years ago - Stars: 1 - Forks: 2

zobaer53/flutter_login_template

Login template with Firebase GetX

Language: Dart - Size: 258 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

urmi-21/TCGA-Data-Analysis

Examples on processing and working with TCGA mutation and RNA-Seq data

Language: R - Size: 2.79 MB - Last synced: 2 months ago - Pushed: about 5 years ago - Stars: 4 - Forks: 2

kevinhu/cancer_data

A unified downloader+preprocessor for cancer genomics datasets

Language: Python - Size: 669 KB - Last synced: 4 days ago - Pushed: 2 months ago - Stars: 14 - Forks: 6

nanxstats/grex

Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data

Language: R - Size: 4.28 MB - Last synced: 13 days ago - Pushed: over 2 years ago - Stars: 8 - Forks: 2

bpark-research/TCGA_Spark

Language: Jupyter Notebook - Size: 1.61 MB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

KarakulakTulay/gtex-tcga-data-download

Describes how to download RNA-Seq controlled data from GTEx via sra-toolkit and from TCGA via GDC Data Transfer Tool

Size: 14.6 KB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 3 - Forks: 0

xuwenjian85/B-GEX

Blood-based multi-tissue gene expression inference with Bayesian regression

Language: Jupyter Notebook - Size: 66.7 MB - Last synced: 8 months ago - Pushed: almost 4 years ago - Stars: 4 - Forks: 0

tjiagoM/gtex-transcriptome-modelling

Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits

Language: Jupyter Notebook - Size: 53 MB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 9 - Forks: 2

sigven/gtexRNA

Gene expression retrieval with GTEx API

Language: R - Size: 3.76 MB - Last synced: 9 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 1

greenelab/cimr-d

client to the cimr-d database for continuous integration and analysis using cimr

Language: Shell - Size: 5.86 MB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 3

Kuanhao-Chao/Transcript_Quantifier_Assessment

🩺 Assessing StringTie, Salmon, and Kallisto with simulated RNA-Seq reads with noises introduced in read- and annotation-level.

Language: Shell - Size: 8.98 MB - Last synced: 10 months ago - Pushed: about 2 years ago - Stars: 3 - Forks: 1

lovelyscientist/rna-seq-vae

Synthetic gene expression data generation using Variational Auto-Encoder

Language: Python - Size: 9.16 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 10 - Forks: 4

thehyve/react-gtex-viz

React components for visualisations from the GTEx web portal

Language: JavaScript - Size: 1.2 MB - Last synced: 1 day ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 1

soedinglab/tejaas

Tejaas - a tool for discovering trans-eQTLs

Language: C - Size: 36.8 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 9 - Forks: 0

ebi-gene-expression-group/atlas-gtex-bulk

Atlas analysis for controlled-access GTEx bulk datasets

Language: Python - Size: 973 KB - Last synced: 2 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

reagan0323/MT-eQTL

Multi-Tissue eQTL

Language: Matlab - Size: 47.9 KB - Last synced: 8 months ago - Pushed: over 6 years ago - Stars: 2 - Forks: 1

hwittich/GTEx-Sample-Classifier Fork of danielsarj/GTEx-Sample-Classifier

COMP479 - Machine Learning final project at Loyola University Chicago.

Size: 6.94 MB - Last synced: 6 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

danielsarj/GTEx-Sample-Classifier

COMP479 - Machine Learning final project at Loyola University Chicago.

Language: Python - Size: 6.94 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

nanxstats/exp2vec

🧬 Tissue-specific gene embeddings trained on GTEx data

Language: R - Size: 99.6 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 2 - Forks: 1

IMS-Bio2Core-Facility/GTExQuery

Multithreading, data handling, and file manipulation for the GTExSnake pipeline

Language: Python - Size: 302 KB - Last synced: 9 days ago - Pushed: over 2 years ago - Stars: 1 - Forks: 1

dhimmel/gtex

GTEx Expression Analysis

Size: 3.67 MB - Last synced: about 1 month ago - Pushed: almost 9 years ago - Stars: 3 - Forks: 2

hessJ/geneAnnotation

Plot gene ontologies

Language: R - Size: 15.4 MB - Last synced: 8 months ago - Pushed: almost 7 years ago - Stars: 2 - Forks: 0

lcolladotor/recount-brain-bog19

Poster for Biology of Genomes 2019 (#bog19) on recount-brain

Language: HTML - Size: 3.33 MB - Last synced: 8 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 3

jhrcook/tidy_GTEx

The GTEx data in a tidy format for use in R

Language: R - Size: 5.86 KB - Last synced: over 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 1

minesh1291/isb-cgc-dash-prep

Size: 8.79 KB - Last synced: over 1 year ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0