GitHub topics: transcript-quantification
GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
Language: R - Size: 549 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 209 - Forks: 24
bioinfodlsu/regulated-cell-death-playground
Collection of analysis scripts and notebooks related to regulated cell death
Language: HTML - Size: 91.6 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
mortazavilab/TALON
Technology agnostic long read analysis pipeline for transcriptomes
Language: Python - Size: 11.4 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 143 - Forks: 30
nunofonseca/irap
integrated RNA-seq Analysis Pipeline
Language: R - Size: 2.13 GB - Last synced at: 6 months ago - Pushed at: over 6 years ago - Stars: 83 - Forks: 34
eudoraleer/scasa
SCASA: Single cell transcript quantification tool
Language: R - Size: 27.9 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 16 - Forks: 4
Kuanhao-Chao/Transcript_Quantifier_Assessment
🩺 Assessing StringTie, Salmon, and Kallisto with simulated RNA-Seq reads with noises introduced in read- and annotation-level.
Language: Shell - Size: 8.98 MB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 1
bcgsc/rsempipeline
A pipeline for running rsem analysis on thousands of samples
Language: Python - Size: 331 KB - Last synced at: 4 months ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 2
Vivianstats/MSIQ
Joint modeling of multiple RNA-seq samples for accurate isoform quantification
Language: R - Size: 15.6 KB - Last synced at: over 2 years ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 1
