Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub / leekgroup / regionReport
Generate HTML report for a set of genomic regions or DESeq2/edgeR results
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/leekgroup%2FregionReport
Stars: 9
Forks: 4
Open Issues: 1
License: None
Language: R
Repo Size: 66.1 MB
Dependencies:
33
Created: over 10 years ago
Updated: over 2 years ago
Last pushed: about 1 year ago
Last synced: about 1 month ago
Topics: bioconductor, derfinder, deseq2, edger, r, regionreport, rmarkdown, rnaseq, rstats
Files
Loading...
Readme
Loading...
Dependencies
DESCRIPTION
cran
- R >= 3.2 depends
- BiocStyle >= 2.5.19 imports
- DEFormats * imports
- DESeq2 * imports
- GenomeInfoDb * imports
- GenomicRanges * imports
- RefManageR * imports
- S4Vectors * imports
- SummarizedExperiment * imports
- derfinder >= 1.25.3 imports
- knitr >= 1.6 imports
- knitrBootstrap >= 0.9.0 imports
- methods * imports
- rmarkdown >= 0.9.5 imports
- utils * imports
- BiocManager * suggests
- DT * suggests
- IRanges * suggests
- RColorBrewer * suggests
- TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
- biovizBase * suggests
- bumphunter >= 1.7.6 suggests
- derfinderPlot >= 1.29.1 suggests
- edgeR * suggests
- ggbio >= 1.35.2 suggests
- ggplot2 * suggests
- grid * suggests
- gridExtra * suggests
- mgcv * suggests
- pasilla * suggests
- pheatmap * suggests
- sessioninfo * suggests
- whisker * suggests