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GitHub / broadinstitute / gatk
Official code repository for GATK versions 4 and up
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk
Stars: 1,611
Forks: 574
Open Issues: 1,322
License: other
Language: Java
Repo Size: 453 MB
Dependencies:
59
Created: over 9 years ago
Updated: about 18 hours ago
Last pushed: about 16 hours ago
Last synced: about 14 hours ago
Commit Stats
Commits: 3578
Authors: 141
Mean commits per author: 25.38
Development Distribution Score: 0.867
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/broadinstitute/gatk
Topics: bioinformatics, dna, gatk, genome, genomics, ngs, science, sequencing, spark
Files
Dependencies
- com.esotericsoftware:kryo 3.0.3 implementation
- com.fasterxml.jackson.module:jackson-module-scala_ * implementation
- com.github.jsr203hadoop:jsr203hadoop 1.0.3 implementation
- com.google.cloud.bigdataoss:gcs-connector 1.9.4-hadoop3 implementation
- com.google.cloud:google-cloud-bigquerystorage 2.9.1 implementation
- com.intel.gkl:gkl 0.8.8 implementation
- com.opencsv:opencsv 3.4 implementation
- com.thoughtworks.paranamer:paranamer 2.8 implementation
- commons-beanutils:commons-beanutils 1.9.3 implementation
- commons-io:commons-io 2.5 implementation
- de.javakaffee:kryo-serializers 0.41 implementation
- gov.nist.math.jama:gov.nist.math.jama 1.1.1 implementation
- it.unimi.dsi:fastutil 7.0.6 implementation
- net.grey-panther:natural-comparator 1.1 implementation
- org.aeonbits.owner:owner 1.0.9 implementation
- org.apache.commons:commons-collections4 4.1 implementation
- org.apache.commons:commons-configuration2 2.4 implementation
- org.apache.commons:commons-lang3 3.5 implementation
- org.apache.commons:commons-math3 3.5 implementation
- org.apache.commons:commons-vfs2 2.0 implementation
- org.apache.httpcomponents:httpclient 4.5.12 implementation
- org.apache.spark:spark-mllib_ * implementation
- org.bdgenomics.adam:adam-core-spark2_ * implementation
- org.bdgenomics.bdg-formats:bdg-formats 0.5.0 implementation
- org.broadinstitute:gatk-bwamem-jni 1.0.4 implementation
- org.broadinstitute:gatk-fermilite-jni 1.2.0 implementation
- org.broadinstitute:gatk-native-bindings 1.0.0 implementation
- org.broadinstitute:hdf5-java-bindings 1.1.0-hdf5_2.11.0 implementation
- org.broadinstitute:http-nio 0.1.0-rc1 implementation
- org.jgrapht:jgrapht-core 1.1.0 implementation
- org.jgrapht:jgrapht-io 1.1.0 implementation
- org.objenesis:objenesis 1.2 implementation
- org.ojalgo:ojalgo 44.0.0 implementation
- org.ojalgo:ojalgo-commons-math3 1.0.0 implementation
- org.reflections:reflections 0.9.10 implementation
- org.xerial:sqlite-jdbc 3.36.0.3 implementation
- com.google.jimfs:jimfs 1.1 testImplementation
- org.mockito:mockito-core 2.28.2 testImplementation
- org.objenesis:objenesis 2.1 testImplementation
- actions/upload-artifact v2 composite
- broadinstitute/carrot-publish-github-action 0.6.0 composite
- actions/checkout v2 composite
- docker/build-push-action ad44023a93711e3deb337508980b4b5e9bcdc5dc composite
- docker/login-action f054a8b539a109f9f41c372932f1ae047eff08c9 composite
- docker/metadata-action 98669ae865ea3cffbcbaa878cf57c20bbf1c6c38 composite
- ./.github/actions/install-cromwell * composite
- ./.github/actions/upload-gatk-test-results * composite
- actions/checkout v2 composite
- actions/download-artifact v2 composite
- actions/setup-java v2 composite
- actions/upload-artifact v2 composite
- docker/build-push-action ad44023a93711e3deb337508980b4b5e9bcdc5dc composite
- docker/metadata-action 98669ae865ea3cffbcbaa878cf57c20bbf1c6c38 composite
- docker/setup-buildx-action v1 composite
- google-github-actions/auth v0 composite
- google-github-actions/setup-gcloud v0 composite
- broadinstitute/gatk gatkbase-2.3.0 build
- ubuntu 18.04 build
- java openjdk-8-jre build