Ecosyste.ms: Repos

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Package Usage: docker: broadinstitute/gatk

Official release repository for GATK versions 4.x
65 versions
Latest release: about 1 year ago
27,976,134 downloads total

View more package details: https://packages.ecosyste.ms/registries/hub.docker.com/packages/broadinstitute/gatk

Dependent Repos 9

Biodepot-LLC/workflows
Workflows made with Biodepot-workflow-builder
  • 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/baserecalibrate/Dockerfiles/Dockerfile
  • 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_HC/Dockerfiles/Dockerfile
  • 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_db_import/Dockerfiles/Dockerfile
  • 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_genotypeGVCFs/Dockerfiles/Dockerfile
  • 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_genotype_posteriors/Dockerfiles/Dockerfile
  • 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_vqsr/Dockerfiles/Dockerfile

Size: 86.6 MB - Last synced: 9 months ago - Pushed: 9 months ago

ivasilyev/biopipelines-docker
The repository contains deployment-ready pipelines for biological data processing
  • latest gatk/Dockerfile

Size: 530 KB - Last synced: 19 days ago - Pushed: 20 days ago

broadinstitute/gatk
Official code repository for GATK versions 4 and up
  • gatkbase-2.3.0 Dockerfile

Size: 453 MB - Last synced: 16 days ago - Pushed: 16 days ago

aws-samples/aws-genomics-workflows 📦
Genomics Workflows on AWS
  • 4.1.3.0 src/aws-genomics-cdk/containers/gatk/Dockerfile

Size: 12.4 MB - Last synced: 3 months ago - Pushed: 10 months ago

namxle-hust/genetics-backend
  • latest Dockerfile

Size: 28.4 MB - Last synced: over 1 year ago - Pushed: over 1 year ago

Schaudge/gatk Fork of broadinstitute/gatk
improved version for somatic variant calling in YunYing Medicine
  • gatkbase-2.3.0 Dockerfile

Size: 405 MB - Last synced: 2 days ago - Pushed: 2 days ago

shengqh/dockers
Docker files
  • 4.2.2.0 cqs-gatk/Dockerfile
  • latest exomeseq_all/Dockerfile

Size: 71.6 MB - Last synced: 19 days ago - Pushed: 19 days ago

StanfordBioinformatics/Hummingbird
Hummingbird: Efficient Performance Prediction for Executing Genomic Applications in the Cloud: https://doi.org/10.1093/bioinformatics/btab161
  • 4.1.4.0 Dockerfile

Size: 389 KB - Last synced: 4 days ago - Pushed: 15 days ago

Ultimagen/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up
  • gatkbase-2.3.0 Dockerfile

Size: 521 MB - Last synced: 11 days ago - Pushed: 11 days ago

chrisamiller/docker-gatk
adding some deps to the gatk image
  • 4.1.3.0 Dockerfile

Size: 0 Bytes - Last synced: about 1 year ago - Pushed: over 3 years ago

genome/docker-gatk-cwl
  • 4.1.8.1 Dockerfile

Size: 1.95 KB - Last synced: about 1 month ago - Pushed: over 3 years ago

mdjaffardjy/reprohackaton_2021
Projet reprohackaton 2021
  • 4.0.8.1 src/.docker_modules/gatk/4.0.8.1/Dockerfile

Size: 17 MB - Last synced: 10 months ago - Pushed: over 2 years ago

HeathHopkins/conpair-dnanexus-app
Bundles Conpair into a DNAnexus app
  • 4.1.8.1 Dockerfile

Size: 3.91 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago

LBMC/ChrSexebelari
The project new URL is https://gitbio.ens-lyon.fr/LBMC/Delattre/ChrSexebelari
  • 4.0.8.1 src/docker_modules/GATK/4.0.8.1/Dockerfile

Size: 10.1 MB - Last synced: about 1 year ago - Pushed: over 4 years ago

FredHutch/gatk-bwa
Docker image with GATK and bwa
  • 4.2.2.0 Dockerfile

Size: 0 Bytes - Last synced: about 2 months ago - Pushed: over 2 years ago

FredHutch/docker-gatk
Docker image with GATK
  • gatkbase-2.0.3 Dockerfile

Size: 5.86 KB - Last synced: about 2 months ago - Pushed: about 5 years ago

BioBD/cromwell-test
Testing Cromwell workflow
  • 4.1.8.1 call_caching/Dockerfile
  • 4.1.8.1 runtime_attributes/Dockerfile
  • 4.1.8.1 spark/Dockerfile
  • 4.1.8.1 wdl_versions/Dockerfile

Size: 38.9 MB - Last synced: 6 months ago - Pushed: over 3 years ago

xingziye/bwa-gatk
GATK with bwa docker build
  • 4.1.3.0 Dockerfile

Size: 4.88 KB - Last synced: over 1 year ago - Pushed: about 4 years ago

bioinf/russian_exome_pipeline
Description of tools and docker image for the Russian exome pipeline
  • latest Dockerfile

Size: 3.19 MB - Last synced: 2 months ago - Pushed: over 2 years ago

Talgutman/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up
  • gatkbase-3.0.0 Dockerfile

Size: 429 MB - Last synced: about 2 months ago - Pushed: about 1 year ago

physical-biology-of-chromatin/PseuDam
  • 4.0.8.1 src/.docker_modules/gatk/4.0.8.1/Dockerfile

Size: 9.84 MB - Last synced: over 1 year ago - Pushed: almost 2 years ago

laderast/docker_dnanexus_tutorial
  • latest 03-build_from_dockerfiles/scenario_3/Dockerfile

Size: 5.86 KB - Last synced: about 2 months ago - Pushed: about 1 year ago

HasiHays/gatkmain Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up
  • gatkbase-2.3.0 Dockerfile

Size: 426 MB - Last synced: 11 months ago - Pushed: over 1 year ago

juancarlosfdc/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up
  • gatkbase-2.3.0 Dockerfile

Size: 400 MB - Last synced: 11 months ago - Pushed: about 2 years ago

haoziyeung/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up
  • gatkbase-1.2.3 Dockerfile

Size: 207 MB - Last synced: 11 months ago - Pushed: about 6 years ago

dksingh3117/aws-batch-genomics
  • gatkbase-1.2.3 tools/bgi/docker/Dockerfile

Last synced: over 1 year ago

wnojopra/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up
  • gatkbase-2.3.0 Dockerfile

Size: 426 MB - Last synced: 10 months ago - Pushed: over 1 year ago

novapyth/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up
  • gatkbase-2.3.0 Dockerfile

Size: 340 MB - Last synced: 10 months ago - Pushed: over 3 years ago

skyclub3/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up
  • gatkbase-2.2.0 Dockerfile

Size: 330 MB - Last synced: 10 months ago - Pushed: over 4 years ago

das2000sidd/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up
  • gatkbase-2.3.0 Dockerfile

Size: 363 MB - Last synced: 9 months ago - Pushed: about 3 years ago

ashwinyes/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up
  • gatkbase-2.0.2 Dockerfile

Size: 232 MB - Last synced: 9 months ago - Pushed: over 5 years ago

scorreard/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up
  • gatkbase-2.3.0 Dockerfile

Size: 426 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

JING-XINXING/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up
  • gatkbase-3.0.0 Dockerfile

Size: 429 MB - Last synced: 9 months ago - Pushed: about 1 year ago

raycodingx/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up
  • gatkbase-2.3.0 Dockerfile

Size: 339 MB - Last synced: 9 months ago - Pushed: almost 4 years ago

bimberlabinternal/VariantAnnotation
A set of scripts to build custom funcotator-compatible data sources
  • latest Dockerfile

Size: 176 KB - Last synced: 6 months ago - Pushed: 6 months ago

NYU-Molecular-Pathology/LG-PACT
NYU Langone Genome PACT (Genome Profiling of Actionable Cancer Targets) targeted exome sequencing analysis pipeline.
  • 4.0.1.2 containers/variant-calling-0.0.1/Dockerfile

Size: 1.76 MB - Last synced: 2 months ago - Pushed: 2 months ago

BioDepot/workflows
  • 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/baserecalibrate/Dockerfiles/Dockerfile
  • 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_HC/Dockerfiles/Dockerfile
  • 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_db_import/Dockerfiles/Dockerfile
  • 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_genotypeGVCFs/Dockerfiles/Dockerfile
  • 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_genotype_posteriors/Dockerfiles/Dockerfile
  • 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_vqsr/Dockerfiles/Dockerfile

Size: 86.3 MB - Last synced: 3 months ago - Pushed: 6 months ago

lsuhpchelp/singularity
  • 4.4.0.0 recipes/gatk/4.4.0.0/Dockerfile

Size: 122 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

kmarsyd/BioinformaticsContainers
Containers built for packaging bioinformatics software
  • 4.1.2.0 Dockerfile

Size: 5.86 KB - Last synced: 5 months ago - Pushed: over 4 years ago

grace190/Team-Collins
  • gatkbase-2.3.0 Downloads/gatk-4.2.1.0/Dockerfile

Size: 133 MB - Last synced: about 2 months ago - Pushed: almost 3 years ago

eeessshhh/learning-nextflow
Hello! This is where I'm saving everything I learn about nextflow as a part of my internship.
  • 4.5.0.0 Dockerfile

Size: 28.3 KB - Last synced: 2 days ago - Pushed: 2 days ago