Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: docker: broadinstitute/gatk
Official release repository for GATK versions 4.x
65 versions
Latest release: about 1 year ago
27,976,134 downloads total
View more package details: https://packages.ecosyste.ms/registries/hub.docker.com/packages/broadinstitute/gatk
Dependent Repos 9
Biodepot-LLC/workflows
Workflows made with Biodepot-workflow-builder- 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/baserecalibrate/Dockerfiles/Dockerfile
- 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_HC/Dockerfiles/Dockerfile
- 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_db_import/Dockerfiles/Dockerfile
- 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_genotypeGVCFs/Dockerfiles/Dockerfile
- 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_genotype_posteriors/Dockerfiles/Dockerfile
- 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_vqsr/Dockerfiles/Dockerfile
Size: 86.6 MB - Last synced: 9 months ago - Pushed: 9 months ago
ivasilyev/biopipelines-docker
The repository contains deployment-ready pipelines for biological data processing- latest gatk/Dockerfile
Size: 530 KB - Last synced: 19 days ago - Pushed: 20 days ago
broadinstitute/gatk
Official code repository for GATK versions 4 and up- gatkbase-2.3.0 Dockerfile
Size: 453 MB - Last synced: 16 days ago - Pushed: 16 days ago
aws-samples/aws-genomics-workflows 📦
Genomics Workflows on AWS- 4.1.3.0 src/aws-genomics-cdk/containers/gatk/Dockerfile
Size: 12.4 MB - Last synced: 3 months ago - Pushed: 10 months ago
namxle-hust/genetics-backend
- latest Dockerfile
Size: 28.4 MB - Last synced: over 1 year ago - Pushed: over 1 year ago
Schaudge/gatk Fork of broadinstitute/gatk
improved version for somatic variant calling in YunYing Medicine- gatkbase-2.3.0 Dockerfile
Size: 405 MB - Last synced: 2 days ago - Pushed: 2 days ago
shengqh/dockers
Docker files- 4.2.2.0 cqs-gatk/Dockerfile
- latest exomeseq_all/Dockerfile
Size: 71.6 MB - Last synced: 19 days ago - Pushed: 19 days ago
StanfordBioinformatics/Hummingbird
Hummingbird: Efficient Performance Prediction for Executing Genomic Applications in the Cloud: https://doi.org/10.1093/bioinformatics/btab161- 4.1.4.0 Dockerfile
Size: 389 KB - Last synced: 4 days ago - Pushed: 15 days ago
Ultimagen/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up- gatkbase-2.3.0 Dockerfile
Size: 521 MB - Last synced: 11 days ago - Pushed: 11 days ago
chrisamiller/docker-gatk
adding some deps to the gatk image- 4.1.3.0 Dockerfile
Size: 0 Bytes - Last synced: about 1 year ago - Pushed: over 3 years ago
genome/docker-gatk-cwl
- 4.1.8.1 Dockerfile
Size: 1.95 KB - Last synced: about 1 month ago - Pushed: over 3 years ago
mdjaffardjy/reprohackaton_2021
Projet reprohackaton 2021- 4.0.8.1 src/.docker_modules/gatk/4.0.8.1/Dockerfile
Size: 17 MB - Last synced: 10 months ago - Pushed: over 2 years ago
HeathHopkins/conpair-dnanexus-app
Bundles Conpair into a DNAnexus app- 4.1.8.1 Dockerfile
Size: 3.91 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago
LBMC/ChrSexebelari
The project new URL is https://gitbio.ens-lyon.fr/LBMC/Delattre/ChrSexebelari- 4.0.8.1 src/docker_modules/GATK/4.0.8.1/Dockerfile
Size: 10.1 MB - Last synced: about 1 year ago - Pushed: over 4 years ago
FredHutch/gatk-bwa
Docker image with GATK and bwa- 4.2.2.0 Dockerfile
Size: 0 Bytes - Last synced: about 2 months ago - Pushed: over 2 years ago
FredHutch/docker-gatk
Docker image with GATK- gatkbase-2.0.3 Dockerfile
Size: 5.86 KB - Last synced: about 2 months ago - Pushed: about 5 years ago
BioBD/cromwell-test
Testing Cromwell workflow- 4.1.8.1 call_caching/Dockerfile
- 4.1.8.1 runtime_attributes/Dockerfile
- 4.1.8.1 spark/Dockerfile
- 4.1.8.1 wdl_versions/Dockerfile
Size: 38.9 MB - Last synced: 6 months ago - Pushed: over 3 years ago
xingziye/bwa-gatk
GATK with bwa docker build- 4.1.3.0 Dockerfile
Size: 4.88 KB - Last synced: over 1 year ago - Pushed: about 4 years ago
bioinf/russian_exome_pipeline
Description of tools and docker image for the Russian exome pipeline- latest Dockerfile
Size: 3.19 MB - Last synced: 2 months ago - Pushed: over 2 years ago
Talgutman/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up- gatkbase-3.0.0 Dockerfile
Size: 429 MB - Last synced: about 2 months ago - Pushed: about 1 year ago
physical-biology-of-chromatin/PseuDam
- 4.0.8.1 src/.docker_modules/gatk/4.0.8.1/Dockerfile
Size: 9.84 MB - Last synced: over 1 year ago - Pushed: almost 2 years ago
laderast/docker_dnanexus_tutorial
- latest 03-build_from_dockerfiles/scenario_3/Dockerfile
Size: 5.86 KB - Last synced: about 2 months ago - Pushed: about 1 year ago
HasiHays/gatkmain Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up- gatkbase-2.3.0 Dockerfile
Size: 426 MB - Last synced: 11 months ago - Pushed: over 1 year ago
juancarlosfdc/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up- gatkbase-2.3.0 Dockerfile
Size: 400 MB - Last synced: 11 months ago - Pushed: about 2 years ago
haoziyeung/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up- gatkbase-1.2.3 Dockerfile
Size: 207 MB - Last synced: 11 months ago - Pushed: about 6 years ago
dksingh3117/aws-batch-genomics
- gatkbase-1.2.3 tools/bgi/docker/Dockerfile
Last synced: over 1 year ago
wnojopra/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up- gatkbase-2.3.0 Dockerfile
Size: 426 MB - Last synced: 10 months ago - Pushed: over 1 year ago
novapyth/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up- gatkbase-2.3.0 Dockerfile
Size: 340 MB - Last synced: 10 months ago - Pushed: over 3 years ago
skyclub3/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up- gatkbase-2.2.0 Dockerfile
Size: 330 MB - Last synced: 10 months ago - Pushed: over 4 years ago
das2000sidd/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up- gatkbase-2.3.0 Dockerfile
Size: 363 MB - Last synced: 9 months ago - Pushed: about 3 years ago
ashwinyes/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up- gatkbase-2.0.2 Dockerfile
Size: 232 MB - Last synced: 9 months ago - Pushed: over 5 years ago
scorreard/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up- gatkbase-2.3.0 Dockerfile
Size: 426 MB - Last synced: about 2 months ago - Pushed: over 1 year ago
JING-XINXING/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up- gatkbase-3.0.0 Dockerfile
Size: 429 MB - Last synced: 9 months ago - Pushed: about 1 year ago
raycodingx/gatk Fork of broadinstitute/gatk
Official code repository for GATK versions 4 and up- gatkbase-2.3.0 Dockerfile
Size: 339 MB - Last synced: 9 months ago - Pushed: almost 4 years ago
bimberlabinternal/VariantAnnotation
A set of scripts to build custom funcotator-compatible data sources- latest Dockerfile
Size: 176 KB - Last synced: 6 months ago - Pushed: 6 months ago
NYU-Molecular-Pathology/LG-PACT
NYU Langone Genome PACT (Genome Profiling of Actionable Cancer Targets) targeted exome sequencing analysis pipeline.- 4.0.1.2 containers/variant-calling-0.0.1/Dockerfile
Size: 1.76 MB - Last synced: 2 months ago - Pushed: 2 months ago
BioDepot/workflows
- 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/baserecalibrate/Dockerfiles/Dockerfile
- 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_HC/Dockerfiles/Dockerfile
- 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_db_import/Dockerfiles/Dockerfile
- 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_genotypeGVCFs/Dockerfiles/Dockerfile
- 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_genotype_posteriors/Dockerfiles/Dockerfile
- 4.1.9.0 DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_vqsr/Dockerfiles/Dockerfile
Size: 86.3 MB - Last synced: 3 months ago - Pushed: 6 months ago
lsuhpchelp/singularity
- 4.4.0.0 recipes/gatk/4.4.0.0/Dockerfile
Size: 122 KB - Last synced: about 1 month ago - Pushed: about 1 month ago
kmarsyd/BioinformaticsContainers
Containers built for packaging bioinformatics software- 4.1.2.0 Dockerfile
Size: 5.86 KB - Last synced: 5 months ago - Pushed: over 4 years ago
grace190/Team-Collins
- gatkbase-2.3.0 Downloads/gatk-4.2.1.0/Dockerfile
Size: 133 MB - Last synced: about 2 months ago - Pushed: almost 3 years ago
eeessshhh/learning-nextflow
Hello! This is where I'm saving everything I learn about nextflow as a part of my internship.- 4.5.0.0 Dockerfile
Size: 28.3 KB - Last synced: 2 days ago - Pushed: 2 days ago